Multiple platform build/check report for BioC 3.6 - CHECK report for RedeR on tokay1

Package: RedeR

Version: 1.26.0

Command: rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.26.0.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.26.0.tar.gz

StartedAt: 2018-04-12 02:34:00 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 02:35:01 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 60.6 seconds

RetCode: 0

Status: WARNINGS

CheckDir: RedeR.Rcheck

Warnings: 1

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### Running command:
###
###   rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.26.0.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.26.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RedeR' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:31: missing file link 'att.setv'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:31: missing file link 'att.sete'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:61: missing file link 'att.setv'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:62: missing file link 'att.sete'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 10.2Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    doc    2.0Mb
    java   4.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RedeR'
    finding HTML links ... done
    RedPort-class                           html  
    RedPort                                 html  
    RedeR-package                           html  
    RedeR.data                              html  
    addEdgeBetweenContainers                html  
    addEdges                                html  
    addGraph                                html  
    addLegend                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:31: missing file link 'att.setv'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:31: missing file link 'att.sete'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:61: missing file link 'att.setv'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpETMmF9/R.INSTALL25cc681d4533/RedeR/man/addLegend.Rd:62: missing file link 'att.sete'
    addNodes                                html  
    addSeries                               html  
    addSubgraph                             html  
    addSubgraph.list                        html  
    att                                     html  
    calld                                   html  
    cea                                     html  
    deSelectEdges                           html  
    deSelectGraph                           html  
    deSelectNodes                           html  
    deleteEdges                             html  
    deleteNodes                             html  
    deleteSelectedEdges                     html  
    deleteSelectedNodes                     html  
    duplicateGraph                          html  
    exitd                                   html  
    getContainerComponets                   html  
    getEdgeIDs                              html  
    getEdges                                html  
    getGraph                                html  
    getNodeIDs                              html  
    getNodes                                html  
    getSourceEdgeIDs                        html  
    getTargetEdgeIDs                        html  
    gtoy.rm                                 html  
    isDynamicsActive                        html  
    mergeNodes                              html  
    mergeOutEdges                           html  
    nestNodes                               html  
    nesthc                                  html  
    ping                                    html  
    relax                                   html  
    resetd                                  html  
    selectAllEdges                          html  
    selectAllNodes                          html  
    selectEdges                             html  
    selectGraph                             html  
    selectNodes                             html  
    setArrowDirection                       html  
    subg                                    html  
    updateContainerSize                     html  
    updateGraph                             html  
    version                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'RedeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RedeR' as RedeR_1.26.0.zip
* DONE (RedeR)
In R CMD INSTALL
In R CMD INSTALL

name	user	system	elapsed
RedPort-class	0	0	0
RedPort	0.08	0.00	0.08
RedeR.data	0.53	0.01	0.54
addEdgeBetweenContainers	0	0	0
addEdges	0.01	0.00	0.02
addGraph	0	0	0
addLegend	0.02	0.00	0.01
addNodes	0	0	0
addSeries	0.01	0.00	0.02
addSubgraph	0.02	0.00	0.02
addSubgraph.list	0.01	0.00	0.01
att	0.33	0.01	0.35
calld	0	0	0
cea	0.02	0.00	0.01
deSelectEdges	0	0	0
deSelectGraph	0	0	0
deSelectNodes	0.01	0.00	0.01
deleteEdges	0.02	0.00	0.02
deleteNodes	0	0	0
deleteSelectedEdges	0.00	0.02	0.01
deleteSelectedNodes	0.01	0.00	0.02
duplicateGraph	0.02	0.00	0.01
exitd	0	0	0
getContainerComponets	0	0	0
getEdgeIDs	0.02	0.00	0.02
getEdges	0	0	0
getGraph	0.01	0.00	0.02
getNodeIDs	0.02	0.00	0.01
getNodes	0	0	0
getSourceEdgeIDs	0	0	0
getTargetEdgeIDs	0.02	0.00	0.01
gtoy.rm	0	0	0
isDynamicsActive	0	0	0
mergeNodes	0	0	0
mergeOutEdges	0	0	0
nestNodes	0.01	0.00	0.02
nesthc	1	0	1
ping	0	0	0
relax	0.02	0.00	0.02
resetd	0	0	0
selectAllEdges	0.02	0.00	0.01
selectAllNodes	0	0	0
selectEdges	0.01	0.00	0.02
selectGraph	0.02	0.00	0.01
selectNodes	0	0	0
setArrowDirection	0.01	0.00	0.02
subg	0.07	0.00	0.06
updateContainerSize	0	0	0
updateGraph	0	0	0
version	0.02	0.00	0.01

name	user	system	elapsed
RedPort-class	0	0	0
RedPort	0.17	0.00	0.17
RedeR.data	0.56	0.00	0.56
addEdgeBetweenContainers	0.02	0.00	0.01
addEdges	0.01	0.00	0.02
addGraph	0.02	0.00	0.02
addLegend	0	0	0
addNodes	0	0	0
addSeries	0	0	0
addSubgraph	0.02	0.00	0.01
addSubgraph.list	0.01	0.00	0.02
att	0.52	0.00	0.51
calld	0	0	0
cea	0.01	0.00	0.02
deSelectEdges	0.02	0.00	0.01
deSelectGraph	0.01	0.00	0.02
deSelectNodes	0.02	0.00	0.02
deleteEdges	0	0	0
deleteNodes	0.00	0.01	0.01
deleteSelectedEdges	0.02	0.00	0.02
deleteSelectedNodes	0	0	0
duplicateGraph	0.01	0.00	0.02
exitd	0	0	0
getContainerComponets	0.02	0.00	0.01
getEdgeIDs	0.01	0.00	0.02
getEdges	0	0	0
getGraph	0	0	0
getNodeIDs	0.03	0.00	0.03
getNodes	0.02	0.00	0.01
getSourceEdgeIDs	0	0	0
getTargetEdgeIDs	0.01	0.00	0.02
gtoy.rm	0	0	0
isDynamicsActive	0	0	0
mergeNodes	0.02	0.00	0.01
mergeOutEdges	0.01	0.00	0.02
nestNodes	0.02	0.00	0.01
nesthc	1.25	0.00	1.25
ping	0	0	0
relax	0.01	0.00	0.02
resetd	0	0	0
selectAllEdges	0.00	0.01	0.02
selectAllNodes	0.02	0.00	0.01
selectEdges	0.01	0.00	0.02
selectGraph	0	0	0
selectNodes	0.02	0.00	0.01
setArrowDirection	0.02	0.00	0.02
subg	0.06	0.00	0.06
updateContainerSize	0	0	0
updateGraph	0.00	0.02	0.02
version	0	0	0

CHECK report for RedeR on tokay1

Summary

Command output

Installation output

Tests output

Example timings