Siddhartha Bagaria
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GoogleGenomics |
| Branch: RELEASE_3_6 |
| Last Commit: 7e5f14b |
| Last Changed Date: 2017-10-30 12:40:50 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:40:47 -0400 (Thu, 12 Apr 2018).
| Package 597/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GoogleGenomics 2.0.0 Siddhartha Bagaria
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | [ OK ] | |
| Package: GoogleGenomics |
| Version: 2.0.0 |
| Command: rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GoogleGenomics_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GoogleGenomics.buildbin-libdir |
| StartedAt: 2018-04-12 11:34:52 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 11:35:19 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 27.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GoogleGenomics_2.0.0.tgz |
| PackageFileSize: 802.1 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GoogleGenomics_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GoogleGenomics.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.0.0.tar.gz' >>>>>>> * installing *source* package ‘GoogleGenomics’ ... checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking how to run the C++ preprocessor... clang++ -E checking for pkg-config... 0 checking if ProtoBuf version >= 3.0.0... "yes" checking for protoc... /usr/local/bin/protoc checking gRPC... "no" configure: WARNING: " gRPC installation could not be found, or protocol buffer library is not >= 3.0.0. If your installation is in a non-standard location, please see installation instructions at https://github.com/Bioconductor/GoogleGenomics/blob/master/README.rst " configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fPIC -Wall -g -O2 -c init.cc -o init.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GoogleGenomics.so init.o -L/usr/local/lib -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Configured public API key. * DONE (GoogleGenomics) >>>>>>> >>>>>>> FIXING LINKS FOR GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so"