Philippe Hupe
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GLAD |
| Branch: RELEASE_3_6 |
| Last Commit: 13d1435 |
| Last Changed Date: 2017-10-30 12:39:03 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:17:38 -0400 (Thu, 12 Apr 2018).
| Package 588/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GLAD 2.42.0 Philippe Hupe
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GLAD |
| Version: 2.42.0 |
| Command: rm -rf GLAD.buildbin-libdir && mkdir GLAD.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GLAD_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GLAD.buildbin-libdir --merge-multiarch GLAD_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GLAD_2.42.0.zip && rm GLAD_2.42.0.tar.gz GLAD_2.42.0.zip |
| StartedAt: 2018-04-11 18:10:24 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:12:06 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 101.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf GLAD.buildbin-libdir && mkdir GLAD.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GLAD_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GLAD.buildbin-libdir --merge-multiarch GLAD_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GLAD_2.42.0.zip && rm GLAD_2.42.0.tar.gz GLAD_2.42.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'GLAD' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c BkpInfo.cpp -o BkpInfo.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c HaarSeg.cpp -o HaarSeg.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c MoveBkp.cpp -o MoveBkp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c OutliersGNL.cpp -o OutliersGNL.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c chrBreakpoints.cpp -o chrBreakpoints.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c cutree.cpp -o cutree.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c daglad.cpp -o daglad.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c distance.cpp -o distance.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c filterBkp.cpp -o filterBkp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c findCluster.cpp -o findCluster.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c glad-utils.cpp -o glad-utils.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c hclust.cpp -o hclust.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c laws.c -o laws.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c loopRemove.cpp -o loopRemove.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'GLAD'
finding HTML links ... done
ChrNumeric html
ColorBar html
GLAD-internal html
arrayCGH html
arrayPersp html
arrayPlot html
as.data.frame.profileCGH html
as.profileCGH html
bladder html
cytoband html
daglad html
glad html
hclust html
kernel html
myPalette html
plotProfile html
profileCGH html
snijders html
tkdaglad html
veltman html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GLAD' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c BkpInfo.cpp -o BkpInfo.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c HaarSeg.cpp -o HaarSeg.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c MoveBkp.cpp -o MoveBkp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c OutliersGNL.cpp -o OutliersGNL.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c chrBreakpoints.cpp -o chrBreakpoints.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c cutree.cpp -o cutree.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c daglad.cpp -o daglad.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c distance.cpp -o distance.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c filterBkp.cpp -o filterBkp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c findCluster.cpp -o findCluster.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c glad-utils.cpp -o glad-utils.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c hclust.cpp -o hclust.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c laws.c -o laws.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=generic -c loopRemove.cpp -o loopRemove.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GLAD' as GLAD_2.42.0.zip
* DONE (GLAD)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GLAD' successfully unpacked and MD5 sums checked
In R CMD INSTALL