Michael Love
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DESeq2 |
| Branch: RELEASE_3_6 |
| Last Commit: ef65091 |
| Last Changed Date: 2017-11-10 15:01:58 -0400 (Fri, 10 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:33 -0400 (Thu, 12 Apr 2018).
| Package 357/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DESeq2 1.18.1 Michael Love
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DESeq2 |
| Version: 1.18.1 |
| Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DESeq2_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq2.buildbin-libdir --merge-multiarch DESeq2_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DESeq2_1.18.1.zip && rm DESeq2_1.18.1.tar.gz DESeq2_1.18.1.zip |
| StartedAt: 2018-04-11 18:40:41 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:42:26 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 104.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DESeq2_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq2.buildbin-libdir --merge-multiarch DESeq2_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DESeq2_1.18.1.zip && rm DESeq2_1.18.1.tar.gz DESeq2_1.18.1.zip
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100 730k 100 730k 0 0 719k 0 0:00:01 0:00:01 --:--:-- 721k
install for i386
* installing *source* package 'DESeq2' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c DESeq2.cpp -o DESeq2.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'DESeq2'
finding HTML links ... done
DESeq html
finding level-2 HTML links ... done
DESeq2-package html
DESeqDataSet html
DESeqResults html
DESeqTransform html
coef html
collapseReplicates html
counts html
design html
dispersionFunction html
dispersions html
estimateBetaPriorVar html
estimateDispersions html
estimateDispersionsGeneEst html
estimateSizeFactors html
estimateSizeFactorsForMatrix html
fpkm html
fpm html
lfcShrink html
makeExampleDESeqDataSet html
nbinomLRT html
nbinomWaldTest html
normTransform html
normalizationFactors html
normalizeGeneLength html
plotCounts html
plotDispEsts html
plotMA html
plotPCA html
plotSparsity html
priorInfo html
replaceOutliers html
results html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0E7uJr/R.INSTALLc9428284d27/DESeq2/man/results.Rd:325: missing file link 'filtered_R'
rlog html
show html
sizeFactors html
summary html
unmix html
varianceStabilizingTransformation html
vst html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DESeq2' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c DESeq2.cpp -o DESeq2.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq2' as DESeq2_1.18.1.zip
* DONE (DESeq2)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'DESeq2' successfully unpacked and MD5 sums checked
In R CMD INSTALL