Patrick C.N. Martin
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ChIPanalyser |
| Branch: RELEASE_3_6 |
| Last Commit: 95cd8ed |
| Last Changed Date: 2017-10-30 12:41:41 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:23 -0400 (Thu, 12 Apr 2018).
| Package 215/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPanalyser 1.0.0 Patrick C.N. Martin
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: ChIPanalyser |
| Version: 1.0.0 |
| Command: rm -rf ChIPanalyser.buildbin-libdir ChIPanalyser.Rcheck && mkdir ChIPanalyser.buildbin-libdir ChIPanalyser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.0.0.tar.gz >ChIPanalyser.Rcheck\00install.out 2>&1 && cp ChIPanalyser.Rcheck\00install.out ChIPanalyser-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ChIPanalyser.buildbin-libdir --install="check:ChIPanalyser-install.out" --force-multiarch --no-vignettes --timings ChIPanalyser_1.0.0.tar.gz |
| StartedAt: 2018-04-11 22:50:14 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 22:56:16 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 361.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ChIPanalyser.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### rm -rf ChIPanalyser.buildbin-libdir ChIPanalyser.Rcheck && mkdir ChIPanalyser.buildbin-libdir ChIPanalyser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.0.0.tar.gz >ChIPanalyser.Rcheck\00install.out 2>&1 && cp ChIPanalyser.Rcheck\00install.out ChIPanalyser-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ChIPanalyser.buildbin-libdir --install="check:ChIPanalyser-install.out" --force-multiarch --no-vignettes --timings ChIPanalyser_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ChIPanalyser.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChIPanalyser/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChIPanalyser' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChIPanalyser' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency.Rd:32: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency.Rd:34: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:41: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:59: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:60: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/NoAccess.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:22: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:88: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:20: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:23: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:34: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOccupancy.Rd:66: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOccupancy.Rd:68: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:24: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:40: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:45: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:81: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:20: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:32: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:55: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:56: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:24: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:33: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/genomicProfileParameters-class.Rd:90: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/genomicProfileParameters.Rd:63: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:20: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:39: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:43: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:58: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/profileAccuracyEstimate.Rd:27: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/profileAccuracyEstimate.Rd:28: missing file link 'GRanges'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ChIPanalyser.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
genomicProfileParameters 7.54 0.25 7.78
genomicProfileParameters-class 6.82 0.25 7.08
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
genomicProfileParameters-class 8.01 0.16 8.17
genomicProfileParameters 6.48 0.22 6.71
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/ChIPanalyser.Rcheck/00check.log'
for details.
ChIPanalyser.Rcheck/00install.out
install for i386
* installing *source* package 'ChIPanalyser' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'ChIPanalyser'
finding HTML links ... done
AllSitesAboveThreshold html
finding level-2 HTML links ... done
BPFrequency html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency.Rd:32: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency.Rd:34: missing file link 'DNAStringSet'
BPFrequency_- html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:41: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:59: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/BPFrequency_-.Rd:60: missing file link 'DNAStringSet'
ChIPanalyser-package html
DNASequenceLength html
DNASequenceLength_- html
GRList-class html
NoAccess html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/NoAccess.Rd:28: missing file link 'GRanges'
PFMFormat html
PFMFormat_ html
PWMThreshold html
PWMThreshold_- html
PWMpseudocount html
PWMpseudocount_- html
PositionFrequencyMatrix html
PositionFrequencyMatrix_- html
PositionWeightMatrix html
PositionWeightMatrix_- html
ScalingFactorPWM html
ScalingFactorPWM_- html
averageExpPWMScore html
backgroundSignal html
backgroundSignal_- html
boundMolecules html
boundMolecules_- html
chipMean html
chipMean_- html
chipSd html
chipSd_- html
chipSmooth html
chipSmooth_- html
computeChipProfile html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:22: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeChipProfile.Rd:88: missing file link 'GRanges'
computeGenomeWidePWMScore html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:20: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:23: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:34: missing file link 'GRanges'
computeOccupancy html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOccupancy.Rd:66: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOccupancy.Rd:68: missing file link 'GRanges'
computeOptimal html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:24: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:40: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:45: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computeOptimal.Rd:81: missing file link 'GRanges'
computePWMScore html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:20: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:32: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:55: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/computePWMScore.Rd:56: missing file link 'GRanges'
data html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:24: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/data.Rd:33: missing file link 'GRanges'
genomicProfileParameters-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/genomicProfileParameters-class.Rd:90: missing file link 'DNAStringSet'
genomicProfileParameters html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/genomicProfileParameters.Rd:63: missing file link 'DNAStringSet'
maxPWMScore html
maxSignal html
maxSignal_- html
minPWMScore html
naturalLog html
naturalLog_- html
noOfSites html
noOfSites_- html
occupancyProfileParameters-class html
occupancyProfileParameters html
ploidy html
ploidy_- html
plotOccupancyProfile html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:20: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:39: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:43: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/plotOccupancyProfile.Rd:58: missing file link 'GRanges'
plotOptimalHeatMaps html
profileAccuracyEstimate html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/profileAccuracyEstimate.Rd:27: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpSua0zV/R.INSTALL295435841d1c/ChIPanalyser/man/profileAccuracyEstimate.Rd:28: missing file link 'GRanges'
removeBackground html
removeBackground_- html
searchSites html
stepSize html
stepSize_- html
strandRule html
strandRule_- html
thetaThreshold html
thetaThreshold_- html
whichstrand html
whichstrand_- html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.0.0.zip
* DONE (ChIPanalyser)
In R CMD INSTALL
In R CMD INSTALL
|
ChIPanalyser.Rcheck/tests_i386/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("ChIPanalyser")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: BSgenome.Dmelanogaster.UCSC.dm3
RUNIT TEST PROTOCOL -- Wed Apr 11 22:55:46 2018
***********************************************
Number of test functions: 2
Number of errors: 0
Number of failures: 0
1 Test Suite :
ChIPanalyser RUnit Tests - 2 test functions, 0 errors, 0 failures
Number of test functions: 2
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
16.81 0.48 17.28
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ChIPanalyser.Rcheck/tests_x64/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("ChIPanalyser")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: BSgenome.Dmelanogaster.UCSC.dm3
RUNIT TEST PROTOCOL -- Wed Apr 11 22:56:04 2018
***********************************************
Number of test functions: 2
Number of errors: 0
Number of failures: 0
1 Test Suite :
ChIPanalyser RUnit Tests - 2 test functions, 0 errors, 0 failures
Number of test functions: 2
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
17.45 0.42 17.87
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ChIPanalyser.Rcheck/examples_i386/ChIPanalyser-Ex.timings
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ChIPanalyser.Rcheck/examples_x64/ChIPanalyser-Ex.timings
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