T.Cokelaer
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CellNOptR |
| Branch: RELEASE_3_6 |
| Last Commit: a29bc89 |
| Last Changed Date: 2017-11-07 02:30:12 -0400 (Tue, 07 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:22 -0400 (Thu, 12 Apr 2018).
| Package 196/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CellNOptR 1.24.1 T.Cokelaer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CellNOptR |
| Version: 1.24.1 |
| Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CellNOptR_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CellNOptR.buildbin-libdir --merge-multiarch CellNOptR_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CellNOptR_1.24.1.zip && rm CellNOptR_1.24.1.tar.gz CellNOptR_1.24.1.zip |
| StartedAt: 2018-04-11 18:42:33 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:44:57 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 143.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CellNOptR_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CellNOptR.buildbin-libdir --merge-multiarch CellNOptR_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CellNOptR_1.24.1.zip && rm CellNOptR_1.24.1.tar.gz CellNOptR_1.24.1.zip
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install for i386
* installing *source* package 'CellNOptR' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O3 -Wall -std=gnu99 -mtune=generic -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
int nReacs = INTEGER(nReacs_in)[0];
^
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
int selCounter = 0;
^
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
int selection[40];
^
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
int or_max = 0;
^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
int curr_max = 0;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O3 -Wall -std=gnu99 -mtune=generic -c simulatorT1.c -o simulatorT1.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O3 -Wall -std=gnu99 -mtune=generic -c simulatorTN.c -o simulatorTN.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'CellNOptR'
finding HTML links ... done
CNORbool html
CNORwrap html
CNOdata html
CNOlist-class html
CNOlist-methods html
CNOlistDREAM html
CNOlistToy html
CNOlistToy2 html
CNOlistToyMMB html
CellNOptR-package html
DreamModel html
ToyModel html
ToyModel2 html
buildBitString html
cSimulator html
checkSignals html
compressModel html
computeScoreT1 html
computeScoreTN html
cutAndPlot html
cutAndPlotResultsT1 html
cutAndPlotResultsTN html
cutCNOlist html
cutModel html
cutNONC html
cutSimList html
defaultParameters html
exhaustive html
expandGates html
findNONC html
gaBinaryT1 html
gaBinaryT2 html
gaBinaryTN html
getFit html
graph2sif html
indexFinder html
internals html
makeCNOlist html
mapBack html
model2igraph html
model2sif html
normaliseCNOlist html
plot-methods html
plotCNOlist html
plotCNOlist2 html
plotCNOlistLarge html
plotCNOlistLargePDF html
plotCNOlistPDF html
plotFit html
plotModel html
plotOptimResults html
plotOptimResultsPDF html
plotOptimResultsPan html
prep4sim html
preprocessing html
randomizeCNOlist html
readMIDAS html
readSBMLQual html
readSIF html
residualError html
sif2graph html
simulateT1 html
simulateTN html
simulatorT0 html
simulatorT1 html
simulatorT2 html
simulatorTN html
writeDot html
writeMIDAS html
writeNetwork html
writeReport html
writeSIF html
writeScaffold html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CellNOptR' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O2 -Wall -std=gnu99 -mtune=generic -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
int nReacs = INTEGER(nReacs_in)[0];
^
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
int selCounter = 0;
^
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
int selection[40];
^
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
int or_max = 0;
^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
int curr_max = 0;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O2 -Wall -std=gnu99 -mtune=generic -c simulatorT1.c -o simulatorT1.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./include -O2 -Wall -std=gnu99 -mtune=generic -c simulatorTN.c -o simulatorTN.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellNOptR' as CellNOptR_1.24.1.zip
* DONE (CellNOptR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'CellNOptR' successfully unpacked and MD5 sums checked
In R CMD INSTALL