Ge Tan
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CNEr |
| Branch: RELEASE_3_6 |
| Last Commit: b8634d6 |
| Last Changed Date: 2017-10-30 12:40:11 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:49 -0400 (Thu, 12 Apr 2018).
| Package 258/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CNEr 1.14.0 Ge Tan
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CNEr |
| Version: 1.14.0 |
| Command: cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.14.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:31:12 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:31:51 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 38.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CNEr_1.14.0.zip |
| PackageFileSize: 19.53 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.14.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/axisTrack.rda (332 bytes security) (stored 0%) adding: data/CNEDanRer10Hg38.rda (332 bytes security) (stored 0%) adding: data/cneFinalListDanRer10Hg38.rda (332 bytes security) (stored 0%) adding: data/CNEHg38DanRer10.rda (332 bytes security) (stored 0%) adding: data/cpgIslands.rda (332 bytes security) (stored 0%) adding: data/grangesPairsForDotplot.rda (332 bytes security) (stored 0%) adding: data/refGenes.rda (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 48%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/CNEr.html (332 bytes security) (deflated 57%) adding: doc/CNEr.R (332 bytes security) (deflated 78%) adding: doc/CNEr.Rmd (332 bytes security) (deflated 69%) adding: doc/index.html (332 bytes security) (deflated 67%) adding: doc/PairwiseWholeGenomeAlignment.html (332 bytes security) (deflated 66%) adding: doc/PairwiseWholeGenomeAlignment.R (332 bytes security) (deflated 79%) adding: doc/PairwiseWholeGenomeAlignment.Rmd (332 bytes security) (deflated 67%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/chr4.hg19.galGal3.net.axt.gz (332 bytes security) (deflated 0%) adding: extdata/cne2wBf_AstMex102_danRer10_48_50 (332 bytes security) (deflated 71%) adding: extdata/cne2wBf_cteIde1_danRer10_100_100 (332 bytes security) (deflated 73%) adding: extdata/cne2wBf_cypCar1_danRer10_100_100 (332 bytes security) (deflated 71%) adding: extdata/cne2wBf_danRer10_hg38_45_50 (332 bytes security) (deflated 58%) adding: extdata/danRer10.hg38.net.axt (332 bytes security) (deflated 70%) adding: extdata/danRer10CNE.sqlite (332 bytes security) (deflated 57%) adding: extdata/filter_regions.danRer10.bed (332 bytes security) (deflated 76%) adding: extdata/filter_regions.hg38.bed (332 bytes security) (deflated 75%) adding: extdata/hg38.danRer10.net.axt (332 bytes security) (deflated 68%) adding: extdata/rmsk.fa (332 bytes security) (stored 0%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 75%) adding: help/CNEr.rdb (332 bytes security) (deflated 1%) adding: help/CNEr.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 84%) adding: html/addAncestorGO.html (332 bytes security) (deflated 50%) adding: html/AssemblyStats.html (332 bytes security) (deflated 50%) adding: html/axisTrack.html (332 bytes security) (deflated 47%) adding: html/Axt-class.html (332 bytes security) (deflated 70%) adding: html/Axt-util.html (332 bytes security) (deflated 52%) adding: html/axtChain.html (332 bytes security) (deflated 61%) adding: html/axtInfo.html (332 bytes security) (deflated 49%) adding: html/binner.html (332 bytes security) (deflated 56%) adding: html/blatCNE.html (332 bytes security) (deflated 58%) adding: html/ceScan-methods.html (332 bytes security) (deflated 67%) adding: html/chainMergeSort.html (332 bytes security) (deflated 66%) adding: html/chainNetSyntenic.html (332 bytes security) (deflated 69%) adding: html/chainPreNet.html (332 bytes security) (deflated 69%) adding: html/CNE-class.html (332 bytes security) (deflated 74%) adding: html/CNEDanRer10Hg38.html (332 bytes security) (deflated 45%) adding: html/CNEDensity.html (332 bytes security) (deflated 64%) adding: html/cneFinalListDanRer10Hg38.html (332 bytes security) (deflated 47%) adding: html/cneMerge.html (332 bytes security) (deflated 60%) adding: html/fetchChromSizes.html (332 bytes security) (deflated 51%) adding: html/fixCoordinates.html (332 bytes security) (deflated 60%) adding: html/GRangePairs-class.html (332 bytes security) (deflated 69%) adding: html/grangesPairsForDotplot.html (332 bytes security) (deflated 48%) adding: html/last.html (332 bytes security) (deflated 62%) adding: html/lastz.html (332 bytes security) (deflated 63%) adding: html/lavToPsl.html (332 bytes security) (deflated 55%) adding: html/makeAncoraFiles.html (332 bytes security) (deflated 57%) adding: html/makeAxtTracks.html (332 bytes security) (deflated 56%) adding: html/makeCNEDensity.html (332 bytes security) (deflated 63%) adding: html/makeGRBs.html (332 bytes security) (deflated 59%) adding: html/matchDistribution.html (332 bytes security) (deflated 53%) adding: html/netToAxt.html (332 bytes security) (deflated 70%) adding: html/orgKEGGIds2EntrezIDs.html (332 bytes security) (deflated 50%) adding: html/plotCNEDistribution.html (332 bytes security) (deflated 60%) adding: html/plotCNEWidth.html (332 bytes security) (deflated 53%) adding: html/psubAxt.html (332 bytes security) (deflated 61%) adding: html/queryCNEData.html (332 bytes security) (deflated 55%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/read.rmMask.GRanges.html (332 bytes security) (deflated 52%) adding: html/read.rmskFasta.html (332 bytes security) (deflated 53%) adding: html/readAncora.html (332 bytes security) (deflated 57%) adding: html/readAncoraIntoSQLite.html (332 bytes security) (deflated 58%) adding: html/readAxt.html (332 bytes security) (deflated 60%) adding: html/readBed.html (332 bytes security) (deflated 58%) adding: html/readCNERangesFromSQLite.html (332 bytes security) (deflated 68%) adding: html/reverseCigar.html (332 bytes security) (deflated 52%) adding: html/saveCNEToSQLite.html (332 bytes security) (deflated 55%) adding: html/scoringMatrix.html (332 bytes security) (deflated 53%) adding: html/subAxt-methods.html (332 bytes security) (deflated 65%) adding: html/syntenicDotplot.html (332 bytes security) (deflated 60%) adding: html/writeAxt.html (332 bytes security) (deflated 51%) adding: INDEX (332 bytes security) (deflated 63%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/CNEr.dll (332 bytes security) (deflated 59%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/CNEr.dll (332 bytes security) (deflated 56%) adding: LICENSE (332 bytes security) (deflated 44%) adding: MD5 (332 bytes security) (deflated 48%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 65%) adding: NEWS (332 bytes security) (deflated 57%) adding: obsolete/ (372 bytes security) (stored 0%) adding: obsolete/ceScan.r (332 bytes security) (deflated 67%) adding: obsolete/ceScanR.r (332 bytes security) (deflated 69%) adding: obsolete/class.r (332 bytes security) (deflated 74%) adding: obsolete/CNEr.Rnw (332 bytes security) (deflated 69%) adding: obsolete/src/ (372 bytes security) (stored 0%) adding: obsolete/src/ceScan.c (332 bytes security) (deflated 68%) adding: obsolete/src/ceScanBranch1.c (332 bytes security) (deflated 73%) adding: obsolete/src/ceScanBranch2.c (332 bytes security) (deflated 72%) adding: obsolete/src/compile (332 bytes security) (deflated 92%) adding: R/ (372 bytes security) (stored 0%) adding: R/CNEr (332 bytes security) (deflated 41%) adding: R/CNEr.rdb (332 bytes security) (deflated 22%) adding: R/CNEr.rdx (332 bytes security) (deflated 1%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/danRer10Pipeline.R (332 bytes security) (deflated 64%) adding: scripts/prepareData.R (332 bytes security) (deflated 73%)