BioC 3.6: CHECK report for sampleClassifier on tokay1

Package: sampleClassifier

Version: 1.1.0

Command: rm -rf sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && mkdir sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sampleClassifier.buildbin-libdir sampleClassifier_1.1.0.tar.gz >sampleClassifier.Rcheck\00install.out 2>&1 && cp sampleClassifier.Rcheck\00install.out sampleClassifier-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sampleClassifier.buildbin-libdir --install="check:sampleClassifier-install.out" --force-multiarch --no-vignettes --timings sampleClassifier_1.1.0.tar.gz

StartedAt: 2017-08-16 02:18:22 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 02:26:37 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 495.1 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && mkdir sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sampleClassifier.buildbin-libdir sampleClassifier_1.1.0.tar.gz >sampleClassifier.Rcheck\00install.out 2>&1 && cp sampleClassifier.Rcheck\00install.out sampleClassifier-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sampleClassifier.buildbin-libdir --install="check:sampleClassifier-install.out" --force-multiarch --no-vignettes --timings sampleClassifier_1.1.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/sampleClassifier.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sampleClassifier/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sampleClassifier' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sampleClassifier' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     89.35   0.39   90.48
classifyProfile            33.11   0.92   34.96
get.heatmap                28.85   0.50   29.36
classifyProfile.svm        23.53   0.41   23.93
classifyProfile.rnaseq.svm 12.13   0.14   12.26
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     77.05   0.50   77.54
classifyProfile            33.89   0.63   34.52
classifyProfile.svm        27.66   0.36   28.02
get.heatmap                26.77   0.41   27.17
classifyProfile.rnaseq.svm 13.89   0.26   14.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'sampleClassifier' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sampleClassifier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sampleClassifier' as sampleClassifier_1.1.0.zip
* DONE (sampleClassifier)

name	user	system	elapsed
classifyProfile	33.11	0.92	34.96
classifyProfile.rnaseq	89.35	0.39	90.48
classifyProfile.rnaseq.svm	12.13	0.14	12.26
classifyProfile.svm	23.53	0.41	23.93
get.heatmap	28.85	0.50	29.36
sampleClassifier-package	0	0	0

name	user	system	elapsed
classifyProfile	33.89	0.63	34.52
classifyProfile.rnaseq	77.05	0.50	77.54
classifyProfile.rnaseq.svm	13.89	0.26	14.15
classifyProfile.svm	27.66	0.36	28.02
get.heatmap	26.77	0.41	27.17
sampleClassifier-package	0	0	0