ReportingTools 2.17.2
Jason A. Hackney , Gabriel Becker
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ReportingTools | | Last Changed Rev: 131570 / Revision: 131943 | | Last Changed Date: 2017-07-25 16:25:37 -0400 (Tue, 25 Jul 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd ReportingTools.buildbin-libdir/ReportingTools && zip -r ../../ReportingTools_2.17.2.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (332 bytes security) (deflated 62%)
adding: data/ (372 bytes security) (stored 0%)
adding: data/mockRnaSeqData.RData (332 bytes security) (deflated 0%)
adding: DESCRIPTION (332 bytes security) (deflated 46%)
adding: doc/ (372 bytes security) (stored 0%)
adding: doc/basicReportingTools.pdf (332 bytes security) (deflated 10%)
adding: doc/basicReportingTools.R (332 bytes security) (deflated 76%)
adding: doc/basicReportingTools.Rnw (332 bytes security) (deflated 66%)
adding: doc/csslib/ (372 bytes security) (stored 0%)
adding: doc/csslib/bootstrap.css (332 bytes security) (deflated 86%)
adding: doc/csslib/images/ (372 bytes security) (stored 0%)
adding: doc/csslib/images/glyphicons-halflings-white.png (332 bytes security) (deflated 3%)
adding: doc/csslib/images/glyphicons-halflings.png (332 bytes security) (deflated 2%)
adding: doc/csslib/images/sort_asc.png (332 bytes security) (deflated 2%)
adding: doc/csslib/images/sort_asc_disabled.png (332 bytes security) (deflated 32%)
adding: doc/csslib/images/sort_both.png (332 bytes security) (deflated 30%)
adding: doc/csslib/images/sort_desc.png (332 bytes security) (deflated 1%)
adding: doc/csslib/images/sort_desc_disabled.png (332 bytes security) (deflated 32%)
adding: doc/csslib/reprise.table.bootstrap.css (332 bytes security) (deflated 71%)
adding: doc/figuresknitrReport/ (372 bytes security) (stored 0%)
adding: doc/figuresknitrReport/knitrReport-59999.pdf (332 bytes security) (deflated 9%)
adding: doc/figuresknitrReport/knitrReport-59999.png (332 bytes security) (deflated 31%)
adding: doc/figuresknitrReport/knitrReport-72776.pdf (332 bytes security) (deflated 7%)
adding: doc/figuresknitrReport/knitrReport-72776.png (332 bytes security) (deflated 34%)
adding: doc/index.html (332 bytes security) (deflated 79%)
adding: doc/jslib/ (372 bytes security) (stored 0%)
adding: doc/jslib/bootstrap.js (332 bytes security) (deflated 82%)
adding: doc/jslib/jquery-1.8.0.min.js (332 bytes security) (deflated 64%)
adding: doc/jslib/jquery.dataTables-1.9.3.js (332 bytes security) (deflated 77%)
adding: doc/jslib/jquery.dataTables.columnFilter.js (332 bytes security) (deflated 78%)
adding: doc/jslib/jquery.dataTables.plugins.js (332 bytes security) (deflated 63%)
adding: doc/jslib/jquery.dataTables.reprise.js (332 bytes security) (deflated 63%)
adding: doc/knitr.html (332 bytes security) (deflated 63%)
adding: doc/knitr.R (332 bytes security) (deflated 51%)
adding: doc/knitr.Rmd (332 bytes security) (deflated 57%)
adding: doc/microarrayAnalysis.pdf (332 bytes security) (deflated 9%)
adding: doc/microarrayAnalysis.R (332 bytes security) (deflated 78%)
adding: doc/microarrayAnalysis.Rnw (332 bytes security) (deflated 69%)
adding: doc/rnaseqAnalysis.pdf (332 bytes security) (deflated 9%)
adding: doc/rnaseqAnalysis.R (332 bytes security) (deflated 77%)
adding: doc/rnaseqAnalysis.Rnw (332 bytes security) (deflated 68%)
adding: doc/shiny.pdf (332 bytes security) (deflated 8%)
adding: doc/shiny.R (332 bytes security) (deflated 71%)
adding: doc/shiny.Rnw (332 bytes security) (deflated 60%)
adding: examples/ (372 bytes security) (stored 0%)
adding: examples/clobberstart.R (332 bytes security) (deflated 60%)
adding: examples/csslib/ (372 bytes security) (stored 0%)
adding: examples/csslib/bootstrap.css (332 bytes security) (deflated 86%)
adding: examples/csslib/images/ (372 bytes security) (stored 0%)
adding: examples/csslib/images/glyphicons-halflings-white.png (332 bytes security) (deflated 3%)
adding: examples/csslib/images/glyphicons-halflings.png (332 bytes security) (deflated 2%)
adding: examples/csslib/images/sort_asc.png (332 bytes security) (deflated 2%)
adding: examples/csslib/images/sort_asc_disabled.png (332 bytes security) (deflated 32%)
adding: examples/csslib/images/sort_both.png (332 bytes security) (deflated 30%)
adding: examples/csslib/images/sort_desc.png (332 bytes security) (deflated 1%)
adding: examples/csslib/images/sort_desc_disabled.png (332 bytes security) (deflated 32%)
adding: examples/csslib/reprise.table.bootstrap.css (332 bytes security) (deflated 71%)
adding: examples/customizeVignette.Rmd (332 bytes security) (deflated 59%)
adding: examples/doRMDtest.R (332 bytes security) (deflated 54%)
adding: examples/extensibility.Rmd (332 bytes security) (deflated 55%)
adding: examples/extensibilityTest.R (332 bytes security) (deflated 50%)
adding: examples/figuresreport2/ (372 bytes security) (stored 0%)
adding: examples/figuresreport2/report2-64673.pdf (332 bytes security) (deflated 9%)
adding: examples/figuresreport2/report2-64673.png (332 bytes security) (deflated 35%)
adding: examples/figuresreport2/report2-7938.pdf (332 bytes security) (deflated 9%)
adding: examples/figuresreport2/report2-7938.png (332 bytes security) (deflated 37%)
adding: examples/indexTest.R (332 bytes security) (deflated 46%)
adding: examples/inlineTest.R (332 bytes security) (deflated 46%)
adding: examples/jslib/ (372 bytes security) (stored 0%)
adding: examples/jslib/bootstrap.js (332 bytes security) (deflated 82%)
adding: examples/jslib/jquery-1.8.0.min.js (332 bytes security) (deflated 64%)
adding: examples/jslib/jquery.dataTables-1.9.3.js (332 bytes security) (deflated 77%)
adding: examples/jslib/jquery.dataTables.columnFilter.js (332 bytes security) (deflated 78%)
adding: examples/jslib/jquery.dataTables.plugins.js (332 bytes security) (deflated 63%)
adding: examples/jslib/jquery.dataTables.reprise.js (332 bytes security) (deflated 63%)
adding: examples/knitrformattest.Rmd (332 bytes security) (deflated 44%)
adding: examples/LinkTest.R (332 bytes security) (deflated 58%)
adding: examples/marraylmtest.Rmd (332 bytes security) (deflated 42%)
adding: examples/pfamtest.Rmd (332 bytes security) (deflated 60%)
adding: examples/posInsertion.R (332 bytes security) (deflated 44%)
adding: examples/publishFlowchart.dia (332 bytes security) (stored 0%)
adding: examples/publishFlowchart.svg (332 bytes security) (deflated 83%)
adding: examples/shinyExample/ (372 bytes security) (stored 0%)
adding: examples/shinyExample/ReadMe.R (332 bytes security) (deflated 37%)
adding: examples/shinyExample/server.R (332 bytes security) (deflated 58%)
adding: examples/shinyExample/shinystuff.Rproj (332 bytes security) (deflated 29%)
adding: examples/shinyExample/ui.R (332 bytes security) (deflated 59%)
adding: examples/testDGEExact.R (332 bytes security) (deflated 46%)
adding: examples/testDOM.R (332 bytes security) (deflated 31%)
adding: examples/testMicro.R (332 bytes security) (deflated 60%)
adding: examples/testReadReport.R (332 bytes security) (deflated 19%)
adding: examples/testRmd.Rmd (332 bytes security) (deflated 47%)
adding: extdata/ (372 bytes security) (stored 0%)
adding: extdata/csslib/ (372 bytes security) (stored 0%)
adding: extdata/csslib/bootstrap.css (332 bytes security) (deflated 86%)
adding: extdata/csslib/bootstrap.spruce.css (332 bytes security) (deflated 84%)
adding: extdata/csslib/images/ (372 bytes security) (stored 0%)
adding: extdata/csslib/images/glyphicons-halflings-white.png (332 bytes security) (deflated 3%)
adding: extdata/csslib/images/glyphicons-halflings.png (332 bytes security) (deflated 2%)
adding: extdata/csslib/images/sort_asc.png (332 bytes security) (deflated 2%)
adding: extdata/csslib/images/sort_asc_disabled.png (332 bytes security) (deflated 32%)
adding: extdata/csslib/images/sort_both.png (332 bytes security) (deflated 30%)
adding: extdata/csslib/images/sort_desc.png (332 bytes security) (deflated 1%)
adding: extdata/csslib/images/sort_desc_disabled.png (332 bytes security) (deflated 32%)
adding: extdata/csslib/reprise.table.bootstrap.css (332 bytes security) (deflated 71%)
adding: extdata/csslib/reprise.table.css (332 bytes security) (deflated 67%)
adding: extdata/jslib/ (372 bytes security) (stored 0%)
adding: extdata/jslib/bootstrap.js (332 bytes security) (deflated 82%)
adding: extdata/jslib/jquery-1.8.0.min.js (332 bytes security) (deflated 64%)
adding: extdata/jslib/jquery.dataTables-1.9.3.js (332 bytes security) (deflated 77%)
adding: extdata/jslib/jquery.dataTables.columnFilter.js (332 bytes security) (deflated 78%)
adding: extdata/jslib/jquery.dataTables.plugins.js (332 bytes security) (deflated 63%)
adding: extdata/jslib/jquery.dataTables.reprise.js (332 bytes security) (deflated 63%)
adding: help/ (372 bytes security) (stored 0%)
adding: help/aliases.rds (332 bytes security) (stored 0%)
adding: help/AnIndex (332 bytes security) (deflated 85%)
adding: help/paths.rds (332 bytes security) (stored 0%)
adding: help/ReportingTools.rdb (332 bytes security) (deflated 1%)
adding: help/ReportingTools.rdx (332 bytes security) (stored 0%)
adding: html/ (372 bytes security) (stored 0%)
adding: html/00Index.html (332 bytes security) (deflated 86%)
adding: html/R.css (332 bytes security) (deflated 75%)
adding: INDEX (332 bytes security) (deflated 65%)
adding: MD5 (332 bytes security) (deflated 57%)
adding: Meta/ (372 bytes security) (stored 0%)
adding: Meta/data.rds (332 bytes security) (stored 0%)
adding: Meta/features.rds (332 bytes security) (stored 0%)
adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
adding: Meta/links.rds (332 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
adding: Meta/package.rds (332 bytes security) (stored 0%)
adding: Meta/Rd.rds (332 bytes security) (stored 0%)
adding: Meta/vignette.rds (332 bytes security) (stored 0%)
adding: NAMESPACE (332 bytes security) (deflated 56%)
adding: NEWS (332 bytes security) (deflated 53%)
adding: R/ (372 bytes security) (stored 0%)
adding: R/ReportingTools (332 bytes security) (deflated 41%)
adding: R/ReportingTools.rdb (332 bytes security) (deflated 17%)
adding: R/ReportingTools.rdx (332 bytes security) (stored 0%)
adding: unitTests/ (372 bytes security) (stored 0%)
adding: unitTests/test_Annotation.R (332 bytes security) (deflated 58%)
adding: unitTests/test_DataFrame.R (332 bytes security) (deflated 47%)
adding: unitTests/test_DESeqDataSet.R (332 bytes security) (deflated 71%)
adding: unitTests/test_DESeqResults.R (332 bytes security) (deflated 67%)
adding: unitTests/test_edgeR.R (332 bytes security) (deflated 76%)
adding: unitTests/test_GeneSets.R (332 bytes security) (deflated 68%)
adding: unitTests/test_handlerConst.R (332 bytes security) (deflated 67%)
adding: unitTests/test_HyperGResults.R (332 bytes security) (deflated 73%)
adding: unitTests/test_knitr.R (332 bytes security) (deflated 33%)
adding: unitTests/test_Link.R (332 bytes security) (deflated 49%)
adding: unitTests/test_MArrayLM.R (332 bytes security) (deflated 74%)
adding: unitTests/test_reportmanip.R (332 bytes security) (deflated 64%)
adding: unitTests/test_testObjectCreation.R (332 bytes security) (deflated 70%)