BioC 3.6: CHECK report for MetaboSignal on veracruz1
This page was generated on 2017-08-16 13:49:22 -0400 (Wed, 16 Aug 2017).
MetaboSignal 1.7.11 Andrea Rodriguez-Martinez
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MetaboSignal | Last Changed Rev: 131249 / Revision: 131943 | Last Changed Date: 2017-07-15 15:02:50 -0400 (Sat, 15 Jul 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: MetaboSignal |
Version: 1.7.11 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MetaboSignal_1.7.11.tar.gz |
StartedAt: 2017-08-16 05:20:48 -0400 (Wed, 16 Aug 2017) |
EndedAt: 2017-08-16 05:26:44 -0400 (Wed, 16 Aug 2017) |
EllapsedTime: 356.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MetaboSignal.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MetaboSignal_1.7.11.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/MetaboSignal.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MetaboSignal/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetaboSignal’ version ‘1.7.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaboSignal’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MS_tissueFilter: no visible binding for global variable
'hpaNormalTissue'
Undefined global functions or variables:
hpaNormalTissue
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.6-bioc/meat/MetaboSignal.Rcheck/00check.log’
for details.
MetaboSignal.Rcheck/00install.out:
* installing *source* package ‘MetaboSignal’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MetaboSignal)
MetaboSignal.Rcheck/MetaboSignal-Ex.timings:
name | user | system | elapsed
|
MS_changeNames | 0.001 | 0.000 | 0.000 |
|
MS_convertGene | 0.299 | 0.003 | 0.932 |
|
MS_distances | 0.196 | 0.008 | 0.210 |
|
MS_exportCytoscape | 0.000 | 0.000 | 0.001 |
|
MS_findMappedNodes | 0.004 | 0.001 | 0.006 |
|
MS_getPathIds | 0 | 0 | 0 |
|
MS_keggFinder | 0.418 | 0.009 | 4.014 |
|
MS_keggNetwork | 0 | 0 | 0 |
|
MS_nodeBW | 0.117 | 0.004 | 0.123 |
|
MS_removeDrugs | 0.005 | 0.001 | 0.006 |
|
MS_removeNode | 0.017 | 0.001 | 0.022 |
|
MS_replaceNode | 0.014 | 0.001 | 0.015 |
|
MS_shortestPaths | 0.157 | 0.004 | 0.163 |
|
MS_shortestPathsNetwork | 0 | 0 | 0 |
|
MS_tissueFilter | 0 | 0 | 0 |
|
MS_topologyFilter | 0.869 | 0.018 | 0.928 |
|