BioC 3.6: CHECK report for IMPCdata on tokay1
This page was generated on 2017-08-16 13:33:41 -0400 (Wed, 16 Aug 2017).
IMPCdata 1.11.0
Jeremy Mason
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IMPCdata | | Last Changed Rev: 129129 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
Summary
| Package: IMPCdata
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| Version: 1.11.0
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| Command: rm -rf IMPCdata.buildbin-libdir IMPCdata.Rcheck && mkdir IMPCdata.buildbin-libdir IMPCdata.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IMPCdata.buildbin-libdir IMPCdata_1.11.0.tar.gz >IMPCdata.Rcheck\00install.out 2>&1 && cp IMPCdata.Rcheck\00install.out IMPCdata-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=IMPCdata.buildbin-libdir --install="check:IMPCdata-install.out" --force-multiarch --no-vignettes --timings IMPCdata_1.11.0.tar.gz
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| StartedAt: 2017-08-16 00:17:48 -0400 (Wed, 16 Aug 2017)
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| EndedAt: 2017-08-16 00:26:04 -0400 (Wed, 16 Aug 2017)
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| EllapsedTime: 495.4 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: IMPCdata.Rcheck
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| Warnings: 0
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Command output
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###
### Running command:
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### rm -rf IMPCdata.buildbin-libdir IMPCdata.Rcheck && mkdir IMPCdata.buildbin-libdir IMPCdata.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IMPCdata.buildbin-libdir IMPCdata_1.11.0.tar.gz >IMPCdata.Rcheck\00install.out 2>&1 && cp IMPCdata.Rcheck\00install.out IMPCdata-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=IMPCdata.buildbin-libdir --install="check:IMPCdata-install.out" --force-multiarch --no-vignettes --timings IMPCdata_1.11.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/IMPCdata.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IMPCdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IMPCdata' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IMPCdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getIMPCDataset 8.58 2.94 12.59
printAlleles 1.11 0.12 51.34
getAlleles 1.03 0.19 51.15
printGenes 1.18 0.02 49.41
getGenes 1.08 0.04 49.69
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getIMPCDataset 5.98 2.65 9.14
printAlleles 1.07 0.04 52.92
getAlleles 1.02 0.05 51.42
getGenes 0.87 0.08 49.28
printGenes 0.85 0.05 49.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out:
install for i386
* installing *source* package 'IMPCdata' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'IMPCdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IMPCdata' as IMPCdata_1.11.0.zip
* DONE (IMPCdata)
IMPCdata.Rcheck/examples_i386/IMPCdata-Ex.timings:
| name | user | system | elapsed
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| getAlleles | 1.03 | 0.19 | 51.15 |
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| getGenes | 1.08 | 0.04 | 49.69 |
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| getIMPCDataset | 8.58 | 2.94 | 12.59 |
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| getIMPCTable | 0.03 | 0.00 | 0.68 |
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| getName | 0.00 | 0.00 | 0.15 |
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| getParameters | 0.07 | 0.02 | 2.36 |
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| getPhenCenters | 0.01 | 0.00 | 2.98 |
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| getPipelines | 0.02 | 0.00 | 0.71 |
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| getProcedures | 0.03 | 0.00 | 3.40 |
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| getStrains | 0.00 | 0.00 | 1.17 |
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| getZygosities | 0.01 | 0.00 | 0.10 |
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| printAlleles | 1.11 | 0.12 | 51.34 |
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| printGenes | 1.18 | 0.02 | 49.41 |
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| printParameters | 0.07 | 0.00 | 2.42 |
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| printPhenCenters | 0.05 | 0.00 | 4.64 |
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| printPipelines | 0.00 | 0.00 | 0.75 |
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| printProcedures | 0.03 | 0.00 | 3.42 |
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| printStrains | 0.00 | 0.00 | 1.08 |
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IMPCdata.Rcheck/examples_x64/IMPCdata-Ex.timings:
| name | user | system | elapsed
|
| getAlleles | 1.02 | 0.05 | 51.42 |
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| getGenes | 0.87 | 0.08 | 49.28 |
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| getIMPCDataset | 5.98 | 2.65 | 9.14 |
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| getIMPCTable | 0.05 | 0.00 | 0.62 |
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| getName | 0.00 | 0.00 | 0.18 |
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| getParameters | 0.05 | 0.00 | 2.37 |
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| getPhenCenters | 0.03 | 0.00 | 2.97 |
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| getPipelines | 0.00 | 0.00 | 0.64 |
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| getProcedures | 0.03 | 0.04 | 3.39 |
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| getStrains | 0.01 | 0.00 | 1.09 |
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| getZygosities | 0.02 | 0.00 | 0.08 |
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| printAlleles | 1.07 | 0.04 | 52.92 |
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| printGenes | 0.85 | 0.05 | 49.95 |
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| printParameters | 0.06 | 0.00 | 2.39 |
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| printPhenCenters | 0.03 | 0.00 | 4.60 |
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| printPipelines | 0.00 | 0.00 | 0.78 |
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| printProcedures | 0.07 | 0.00 | 3.40 |
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| printStrains | 0.02 | 0.00 | 1.04 |
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