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BioC 3.6: INSTALL report for FEM on tokay1

This page was generated on 2017-08-16 13:33:31 -0400 (Wed, 16 Aug 2017).

Package 443/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FEM 3.5.0
Zhen Yang
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/FEM
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: FEM
Version: 3.5.0
Command: rm -rf FEM.buildbin-libdir && mkdir FEM.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/FEM_3.5.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=FEM.buildbin-libdir --merge-multiarch FEM_3.5.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL FEM_3.5.0.zip && rm FEM_3.5.0.tar.gz FEM_3.5.0.zip
StartedAt: 2017-08-15 18:19:12 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:20:27 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 75.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf FEM.buildbin-libdir && mkdir FEM.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/FEM_3.5.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=FEM.buildbin-libdir --merge-multiarch FEM_3.5.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL FEM_3.5.0.zip  && rm FEM_3.5.0.tar.gz FEM_3.5.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 13.4M  100 13.4M    0     0  80.0M      0 --:--:-- --:--:-- --:--:-- 81.3M

install for i386

* installing *source* package 'FEM' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowMeans' by 'BiocGenerics::rowMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::colMeans' by 'BiocGenerics::colMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::colSums' by 'BiocGenerics::colSums' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowSums' by 'BiocGenerics::rowSums' when loading 'FEM'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowMeans' by 'BiocGenerics::rowMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::colMeans' by 'BiocGenerics::colMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::colSums' by 'BiocGenerics::colSums' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowSums' by 'BiocGenerics::rowSums' when loading 'FEM'

install for x64

* installing *source* package 'FEM' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'Matrix::colSums' by 'BiocGenerics::colSums' when loading 'FEM'
Warning: replacing previous import 'Matrix::colMeans' by 'BiocGenerics::colMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowMeans' by 'BiocGenerics::rowMeans' when loading 'FEM'
Warning: replacing previous import 'Matrix::rowSums' by 'BiocGenerics::rowSums' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
* MD5 sums
packaged installation of 'FEM' as FEM_3.5.0.zip
* DONE (FEM)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'FEM' successfully unpacked and MD5 sums checked