BioC experimental data: CHECK report for ELMER.data on malbec2
This page was generated on 2017-10-18 15:09:45 -0400 (Wed, 18 Oct 2017).
ELMER.data 1.6.0 Lijing Yao
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017) | URL: https://git.bioconductor.org/packages/ELMER.data | Branch: RELEASE_3_5 | Last Commit: eb9dd37 | Last Changed Date: 2017-08-16 15:55:13 -0400 (Wed, 16 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
Summary
Package: ELMER.data |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ELMER.data_1.6.0.tar.gz |
StartedAt: 2017-10-18 10:42:37 -0400 (Wed, 18 Oct 2017) |
EndedAt: 2017-10-18 10:43:24 -0400 (Wed, 18 Oct 2017) |
EllapsedTime: 46.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ELMER.data.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ELMER.data_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/ELMER.data.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ELMER.data/DESCRIPTION’ ... OK
* this is package ‘ELMER.data’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ELMER.data’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 8.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.5-data-experiment/meat/ELMER.data.Rcheck/00check.log’
for details.
ELMER.data.Rcheck/00install.out:
* installing *source* package ‘ELMER.data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ELMER.data)
ELMER.data.Rcheck/ELMER.data-Ex.timings:
name | user | system | elapsed
|
Combined.TSS | 0.260 | 0.012 | 0.271 |
|
Probes.motif | 1.256 | 0.172 | 1.430 |
|
Union.enhancer | 0.076 | 0.008 | 0.086 |
|
human.TF | 0.004 | 0.000 | 0.005 |
|
motif.relavent.TFs | 0.072 | 0.004 | 0.079 |
|