BioC 3.5: CHECK report for sights on veracruz2

Package: sights

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings sights_1.2.0.tar.gz

StartedAt: 2017-10-18 09:06:10 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 09:08:00 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 109.5 seconds

RetCode: 0

Status:  OK

CheckDir: sights.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings sights_1.2.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/sights.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sights/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sights’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sights’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc   5.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
plotAutoco 5.384  0.053   5.644
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.5-bioc/meat/sights.Rcheck/00check.log’
for details.

* installing *source* package ‘sights’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sights)

name	user	system	elapsed
ex_dataMatrix	0.030	0.002	0.033
inglese	0.145	0.007	0.158
normLoess	0.239	0.003	0.246
normMedFil	0.321	0.003	0.335
normR	0.038	0.002	0.041
normRobZ	0.005	0.001	0.005
normSPAWN	0.127	0.002	0.135
normSights	0.005	0.001	0.005
normZ	0.007	0.000	0.008
plot3d	0.912	0.018	0.964
plotAutoco	5.384	0.053	5.644
plotBox	1.402	0.012	1.459
plotHeatmap	2.422	0.026	2.530
plotHist	0.395	0.005	0.406
plotIGFit	0.285	0.004	0.295
plotScatter	1.247	0.011	1.291
plotSights	1.929	0.016	2.003
statFDR	0.058	0.001	0.061
statRVM	0.086	0.002	0.095
statSights	0.198	0.003	0.214
statT	0.066	0.001	0.069