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BioC 3.5: BUILD BIN report for bamsignals on toluca2

This page was generated on 2017-04-23 14:39:46 -0400 (Sun, 23 Apr 2017).

Package 83/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bamsignals 1.7.0
Alessandro Mammana
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bamsignals
Last Changed Rev: 122712 / Revision: 129046
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bamsignals
Version: 1.7.0
Command: rm -rf bamsignals.buildbin-libdir && mkdir bamsignals.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bamsignals_1.7.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bamsignals.buildbin-libdir
StartedAt: 2017-04-23 11:39:49 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 11:40:10 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 21.0 seconds
RetCode: 0
Status:  OK 
PackageFile: bamsignals_1.7.0.tgz
PackageFileSize: 2.04 MiB

Command output

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###
### Running command:
###
###   rm -rf bamsignals.buildbin-libdir && mkdir bamsignals.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bamsignals_1.7.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bamsignals.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bamsignals.buildbin-libdir bamsignals_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package ‘bamsignals’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhtslib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/zlibbioc/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c CountSignals.cpp -o CountSignals.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhtslib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/zlibbioc/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhtslib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/zlibbioc/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c bamsignals.cpp -o bamsignals.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhtslib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/zlibbioc/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c bamsignals_init.c -o bamsignals_init.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bamsignals.so CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhtslib/lib/libhts.a -lz -pthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
clang: warning: argument unused during compilation: '-pthread'
installing to /Users/biocbuild/bbs-3.5-bioc/meat/bamsignals.buildbin-libdir/bamsignals/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bamsignals)


>>>>>>> 
>>>>>>> FIXING LINKS FOR bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "bamsignals.buildbin-libdir/bamsignals/libs//bamsignals.so"