EWCE 1.3.0
Nathan Skene
| Snapshot Date: 2017-03-30 17:16:21 -0400 (Thu, 30 Mar 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EWCE | | Last Changed Rev: 122712 / Revision: 127890 | | Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf EWCE.buildbin-libdir EWCE.Rcheck && mkdir EWCE.buildbin-libdir EWCE.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EWCE.buildbin-libdir EWCE_1.3.0.tar.gz >EWCE.Rcheck\00install.out 2>&1 && cp EWCE.Rcheck\00install.out EWCE-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=EWCE.buildbin-libdir --install="check:EWCE-install.out" --force-multiarch --no-vignettes --timings EWCE_1.3.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/EWCE.Rcheck'
* using R version 3.4.0 alpha (2017-03-29 r72438)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EWCE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EWCE' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EWCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bootstrap.enrichment.test: no visible global function definition for
'sd'
ewce.plot: no visible global function definition for 'p.adjust'
ewce_expression_data: no visible global function definition for 'data'
generate.bootstrap.plots: no visible global function definition for
'pdf'
generate.bootstrap.plots: no visible global function definition for
'dev.off'
merged_ewce: no visible global function definition for 'sd'
prepare.genesize.control.network: no visible global function definition
for 'aggregate'
prepare.genesize.control.network: no visible global function definition
for 'data'
prepare.genesize.control.network: no visible global function definition
for 'quantile'
read_celltype_data: no visible global function definition for
'read.csv'
read_celltype_data: no visible global function definition for
'aggregate'
Undefined global functions or variables:
aggregate data dev.off p.adjust pdf quantile read.csv sd
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("stats", "aggregate", "p.adjust", "quantile", "sd")
importFrom("utils", "data", "read.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
bootstrap.enrichment.test 5.13 0.27 316.3
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
bootstrap.enrichment.test 5.64 0.2 80.39
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/EWCE.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'EWCE' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'EWCE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EWCE' as EWCE_1.3.0.zip
* DONE (EWCE)