ncdfFlow 2.22.1
Mike Jiang
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/ncdfFlow | | Last Changed Rev: 131705 / Revision: 131943 | | Last Changed Date: 2017-08-01 17:43:19 -0400 (Tue, 01 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | ERROR | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |
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### Running command:
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### rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/ncdfFlow_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=ncdfFlow.buildbin-libdir --merge-multiarch ncdfFlow_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL ncdfFlow_2.22.1.zip && rm ncdfFlow_2.22.1.tar.gz ncdfFlow_2.22.1.zip
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100 2819k 100 2819k 0 0 59.9M 0 --:--:-- --:--:-- --:--:-- 61.1M
install for i386
* installing *source* package 'ncdfFlow' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp includeWin/i386/* includeWin/
cp libwin/i386/*.dll .
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
bitOps.cpp: In function 'Rcpp::LogicalVector toLogical(Rcpp::RawVector)':
bitOps.cpp:23:11: warning: unused variable 'nByte' [-Wunused-variable]
unsigned nByte = bytes.size();
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c hdfFlow.c -o hdfFlow.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function 'Rcpp::NumericVector readSlice_cpp(std::string, std::vector<unsigned int, std::allocator<unsigned int> >, unsigned int, unsigned int&)':
readFrame.cpp:140:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
readFrame.cpp:237:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
readFrame.cpp: In function 'Rcpp::S4 readFrame(Rcpp::S4, Rcpp::RObject, Rcpp::RObject, bool)':
readFrame.cpp:379:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i = 0; i < j_val.size(); i++){
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o -L. -llibhdf5ForBioC-7 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ncdfFlow' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp includeWin/x64/* includeWin/
cp libwin/x64/*.dll .
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
bitOps.cpp: In function 'Rcpp::LogicalVector toLogical(Rcpp::RawVector)':
bitOps.cpp:23:11: warning: unused variable 'nByte' [-Wunused-variable]
unsigned nByte = bytes.size();
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c hdfFlow.c -o hdfFlow.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function 'Rcpp::NumericVector readSlice_cpp(std::string, std::vector<unsigned int, std::allocator<unsigned int> >, unsigned int, unsigned int&)':
readFrame.cpp:140:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
readFrame.cpp:237:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o -L. -llibhdf5ForBioC-7 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ncdfFlow' as ncdfFlow_2.22.1.zip
* DONE (ncdfFlow)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'ncdfFlow' successfully unpacked and MD5 sums checked