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BioC 3.5: BUILD BIN report for geecc on veracruz2

This page was generated on 2017-08-16 13:32:22 -0400 (Wed, 16 Aug 2017).

Package 501/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geecc 1.10.0
Markus Boenn
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/geecc
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: geecc
Version: 1.10.0
Command: rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geecc_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R geecc.buildbin-libdir
StartedAt: 2017-08-16 10:15:29 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 10:15:56 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 26.2 seconds
RetCode: 0
Status:  OK 
PackageFile: geecc_1.10.0.tgz
PackageFileSize: 1.556 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geecc_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R geecc.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=geecc.buildbin-libdir geecc_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘geecc’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c rcpp_hello_world.cpp -o rcpp_hello_world.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c specialists.cpp -o specialists.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geecc.so RcppExports.o rcpp_hello_world.o specialists.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/geecc.buildbin-libdir/geecc/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (geecc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR geecc.buildbin-libdir/geecc/libs//geecc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"