BioC 3.5: CHECK report for erccdashboard on tokay2

Package: erccdashboard

Version: 1.10.0

Command: rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.10.0.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.10.0.tar.gz

StartedAt: 2017-08-15 23:34:35 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 23:37:15 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 160.4 seconds

RetCode: 0

Status:  OK

CheckDir: erccdashboard.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.10.0.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/erccdashboard.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erccdashboard/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'erccdashboard' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erccdashboard' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dynRangePlot: no visible binding for global variable 'value'
dynRangePlot: no visible binding for global variable 'Rep'
Undefined global functions or variables:
  Rep value
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
estLODR 5.55      0    5.54
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
estLODR 8.92      0    8.92
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/erccdashboard.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'erccdashboard' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'erccdashboard' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erccdashboard' as erccdashboard_1.10.0.zip
* DONE (erccdashboard)

name	user	system	elapsed
ERCC	0.01	0.00	0.02
SEQC.Example	0	0	0
annotLODR	2.17	0.08	2.25
dynRangePlot	2.41	0.02	2.43
erccROC	2.26	0.01	2.28
estLODR	5.55	0.00	5.54
est_r_m	0.76	0.00	0.77
geneExprTest	0.8	0.0	0.8
initDat	0.27	0.00	0.26
maSignal	1.92	0.00	1.92
runDashboard	0	0	0
saveERCCPlots	0	0	0

name	user	system	elapsed
ERCC	0	0	0
SEQC.Example	0.00	0.01	0.02
annotLODR	3.09	0.03	3.12
dynRangePlot	3.82	0.05	3.86
erccROC	3.26	0.02	3.28
estLODR	8.92	0.00	8.92
est_r_m	0.7	0.0	0.7
geneExprTest	1.13	0.00	1.13
initDat	0.22	0.01	0.23
maSignal	3.28	0.00	3.28
runDashboard	0	0	0
saveERCCPlots	0	0	0