BioC 3.5: CHECK report for affxparser on tokay2

Package: affxparser

Version: 1.48.0

Command: rm -rf affxparser.buildbin-libdir affxparser.Rcheck && mkdir affxparser.buildbin-libdir affxparser.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affxparser.buildbin-libdir affxparser_1.48.0.tar.gz >affxparser.Rcheck\00install.out 2>&1 && cp affxparser.Rcheck\00install.out affxparser-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=affxparser.buildbin-libdir --install="check:affxparser-install.out" --force-multiarch --no-vignettes --timings affxparser_1.48.0.tar.gz

StartedAt: 2017-08-15 21:52:30 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 22:01:01 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 511.8 seconds

RetCode: 0

Status:  OK

CheckDir: affxparser.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf affxparser.buildbin-libdir affxparser.Rcheck && mkdir affxparser.buildbin-libdir affxparser.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affxparser.buildbin-libdir affxparser_1.48.0.tar.gz >affxparser.Rcheck\00install.out 2>&1 && cp affxparser.Rcheck\00install.out affxparser-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=affxparser.buildbin-libdir --install="check:affxparser-install.out" --force-multiarch --no-vignettes --timings affxparser_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affxparser/DESCRIPTION' ... OK
* this is package 'affxparser' version '1.48.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  affxparser/src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.cpp
  affxparser/src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.h

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'affxparser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.buildbin-libdir/affxparser/libs/i386/affxparser.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'convertCel.R'
  Running 'readCdfDataFrame.R'
  Running 'readCdfQc.R'
  Running 'readCdfUnitsWriteMap.R'
  Running 'readCdfUnits_etal.R'
  Running 'readCel.R'
  Running 'readCelIntensities.R'
  Running 'readCelRectangle.R'
  Running 'readCelUnits.R'
  Running 'readPgf.R'
  Running 'testWriteAndReadEmptyCdf.R'
  Running 'testWriteAndReadEmptyCel.R'
 OK
** running tests for arch 'x64' ...
  Running 'convertCel.R'
  Running 'readCdfDataFrame.R'
  Running 'readCdfQc.R'
  Running 'readCdfUnitsWriteMap.R'
  Running 'readCdfUnits_etal.R'
  Running 'readCel.R'
  Running 'readCelIntensities.R'
  Running 'readCelRectangle.R'
  Running 'readCelUnits.R'
  Running 'readPgf.R'
  Running 'testWriteAndReadEmptyCdf.R'
  Running 'testWriteAndReadEmptyCel.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'affxparser' ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:25,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:25,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:25,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CDFFileData.h:37,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/parameter/src/ParameterException.h:24,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:27,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.h:27,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/utils/src/checksum.h:27,
                 from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Fs.h:27,
                 from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/BPMAPFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from fusion_sdk/file/BPMAPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/BPMAPFileWriter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from fusion_sdk/file/BPMAPFileWriter.h:26,
                 from fusion_sdk/file/BPMAPFileWriter.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CDFFileData.h:37,
                 from fusion_sdk/file/CDFFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/file/CDFFileData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CHPFileData.h:36,
                 from fusion_sdk/file/CHPFileData.cpp:20:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/file/TagValuePair.h:27,
                 from fusion_sdk/file/CHPFileData.h:34,
                 from fusion_sdk/file/CHPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/FileIO.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/FileIO.cpp:23:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/FileWriter.h:26,
                 from fusion_sdk/file/FileWriter.cpp:25:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/FileWriter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o 
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
                 from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o 
In file included from fusion_sdk/file/TsvFile/PgfFile.h:32:0,
                 from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o 
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:24:0:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/Err.h:34,
                 from fusion_sdk/util/AffxString.h:29,
                 from fusion_sdk/util/AffxByteArray.h:29,
                 from fusion_sdk/util/AffxByteArray.cpp:27:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/AffxConv.h:33,
                 from fusion_sdk/util/AffxByteArray.h:28,
                 from fusion_sdk/util/AffxByteArray.cpp:27:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxConv.cpp -o fusion_sdk/util/AffxConv.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/AffxConv.cpp:34:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/AffxConv.h:33,
                 from fusion_sdk/util/AffxConv.cpp:32:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/MsgStream.cpp -o fusion_sdk/util/MsgStream.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/Err.h:34,
                 from fusion_sdk/util/MsgStream.cpp:33:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/MsgHandler.h:31,
                 from fusion_sdk/util/MsgStream.h:32,
                 from fusion_sdk/util/MsgStream.cpp:31:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Err.cpp -o fusion_sdk/util/Err.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Fs.cpp -o fusion_sdk/util/Fs.o 
fusion_sdk/util/Fs.cpp:43:0: warning: "S_IRUSR" redefined
 #define S_IRUSR 00400 //owner has read permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:152:0: note: this is the location of the previous definition
 #define S_IRUSR  _S_IRUSR
 ^
fusion_sdk/util/Fs.cpp:44:0: warning: "S_IWUSR" redefined
 #define S_IWUSR 00200 //owner has write permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:151:0: note: this is the location of the previous definition
 #define S_IWUSR  _S_IWUSR
 ^
fusion_sdk/util/Fs.cpp:45:0: warning: "S_IXUSR" redefined
 #define S_IXUSR 00100 ///owner has execute permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:150:0: note: this is the location of the previous definition
 #define S_IXUSR  _S_IXUSR
 ^
fusion_sdk/util/Fs.cpp: In static member function 'static AptErr_t Fs::listDir(const string&, std::vector<std::basic_string<char> >&, bool)':
fusion_sdk/util/Fs.cpp:1028:9: warning: unused variable 'rv' [-Wunused-variable]
   DWORD rv=0;
         ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Verbose.cpp -o fusion_sdk/util/Verbose.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Fs.h:27,
                 from fusion_sdk/util/Verbose.cpp:31:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/calvin_files/utils/src/StringUtils.h:27,
                 from fusion_sdk/util/Verbose.cpp:29:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/RowFile.cpp:30:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/RowFile.h:31,
                 from fusion_sdk/util/RowFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Util.h:35,
                 from fusion_sdk/util/TableFile.h:32,
                 from fusion_sdk/util/TableFile.cpp:28:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/RowFile.h:31,
                 from fusion_sdk/util/TableFile.h:31,
                 from fusion_sdk/util/TableFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o 
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cel_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cdf_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cdf_extras.cpp:8:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o 
In file included from R_affx_bpmap_parser.cpp:4:0:
R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from R_affx_bpmap_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_bpmap_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from R_affx_bpmap_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_affx_bpmap_parser.cpp: In function 'SEXPREC* R_affx_get_bpmap_file(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
R_affx_bpmap_parser.cpp:482:42: warning: 'centerpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(centerpos)[j] = seqHit.getCenterPosition();
                                          ^
R_affx_bpmap_parser.cpp:479:45: warning: 'startpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
                             INTEGER(startpos)[j] = seqHit.getStartPosition();
                                             ^
R_affx_bpmap_parser.cpp:485:44: warning: 'matchscore' may be used uninitialized in this function [-Wmaybe-uninitialized]
                             REAL(matchscore)[j] = (double)seqHit.MatchScore;
                                            ^
R_affx_bpmap_parser.cpp:488:44: warning: 'probelength' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(probelength)[j] = (int)seqHit.ProbeLength;
                                            ^
R_affx_bpmap_parser.cpp:467:39: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(strand)[j] = (unsigned int)seqHit.TopStrand;
                                       ^
R_affx_bpmap_parser.cpp:475:68: warning: 'probeseq' may be used uninitialized in this function [-Wmaybe-uninitialized]
                           SET_STRING_ELT(probeseq, j, mkChar(cstr));
                                                                    ^
R_affx_bpmap_parser.cpp:502:56: warning: 'mmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         SET_VECTOR_ELT(seqObj, kk, mmy);
                                                        ^
R_affx_bpmap_parser.cpp:463:36: warning: 'mmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(mmx)[j] = seqHit.MMX;
                                    ^
R_affx_bpmap_parser.cpp:495:52: warning: 'pmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     SET_VECTOR_ELT(seqObj, kk, pmy);
                                                    ^
R_affx_bpmap_parser.cpp:493:52: warning: 'pmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     SET_VECTOR_ELT(seqObj, kk, pmx);
                                                    ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o 
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
                 from R_affx_clf_pgf_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/portability/affy-base-types.h:56,
                 from fusion_sdk/file/TsvFile/TsvFile.h:30,
                 from fusion_sdk/file/TsvFile/ClfFile.h:31,
                 from R_affx_clf_pgf_parser.cpp:2:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
                 from R_affx_clf_pgf_parser.cpp:2:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
R_affx_clf_pgf_parser.cpp: In function 'void R_affx_get_body(affx::PgfFile*, SEXP, SEXP)':
R_affx_clf_pgf_parser.cpp:135:35: warning: 'pindices' may be used uninitialized in this function [-Wmaybe-uninitialized]
           currIndex = pindices[++i];
                                   ^
R_affx_clf_pgf_parser.cpp:132:4: warning: 'currIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
    if (nProbesets < currIndex) continue;
    ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
                 from R_affx_chp_parser.cpp:21:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_affx_chp_parser.cpp: In function 'SEXPREC* R_affx_GetCHPGenotypingResults(affymetrix_fusion_io::FusionCHPLegacyData*)':
R_affx_chp_parser.cpp:389:33: warning: 'nocall' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 7, nocall);
                                 ^
R_affx_chp_parser.cpp:388:29: warning: 'bb' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 6, bb);
                             ^
R_affx_chp_parser.cpp:387:29: warning: 'ab' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 5, ab);
                             ^
R_affx_chp_parser.cpp:386:29: warning: 'aa' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 4, aa);
                             ^
R_affx_chp_parser.cpp:383:31: warning: 'ras1' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 5, ras1);
                               ^
R_affx_chp_parser.cpp:360:16: warning: 'ras2' may be used uninitialized in this function [-Wmaybe-uninitialized]
       REAL(ras2)[i] =  f.GetRAS2();
                ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o affxparser.dll tmp.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -lws2_32 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.buildbin-libdir/affxparser/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'affxparser' ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:25,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:25,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:28,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:25,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CDFFileData.h:37,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/parameter/src/ParameterException.h:24,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:27,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.h:27,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/utils/src/checksum.h:27,
                 from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Fs.h:27,
                 from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/BPMAPFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from fusion_sdk/file/BPMAPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/BPMAPFileWriter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from fusion_sdk/file/BPMAPFileWriter.h:26,
                 from fusion_sdk/file/BPMAPFileWriter.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CDFFileData.h:37,
                 from fusion_sdk/file/CDFFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/file/CDFFileData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/CHPFileData.h:36,
                 from fusion_sdk/file/CHPFileData.cpp:20:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/file/TagValuePair.h:27,
                 from fusion_sdk/file/CHPFileData.h:34,
                 from fusion_sdk/file/CHPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/FileIO.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/FileIO.cpp:23:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/file/FileIO.h:27,
                 from fusion_sdk/file/FileWriter.h:26,
                 from fusion_sdk/file/FileWriter.cpp:25:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/FileWriter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o 
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
                 from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o 
In file included from fusion_sdk/file/TsvFile/PgfFile.h:32:0,
                 from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o 
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:24:0:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/Err.h:34,
                 from fusion_sdk/util/AffxString.h:29,
                 from fusion_sdk/util/AffxByteArray.h:29,
                 from fusion_sdk/util/AffxByteArray.cpp:27:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/AffxConv.h:33,
                 from fusion_sdk/util/AffxByteArray.h:28,
                 from fusion_sdk/util/AffxByteArray.cpp:27:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxConv.cpp -o fusion_sdk/util/AffxConv.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/AffxConv.cpp:34:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/AffxConv.h:33,
                 from fusion_sdk/util/AffxConv.cpp:32:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/MsgStream.cpp -o fusion_sdk/util/MsgStream.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/Err.h:34,
                 from fusion_sdk/util/MsgStream.cpp:33:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/MsgHandler.h:31,
                 from fusion_sdk/util/MsgStream.h:32,
                 from fusion_sdk/util/MsgStream.cpp:31:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Err.cpp -o fusion_sdk/util/Err.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Fs.cpp -o fusion_sdk/util/Fs.o 
fusion_sdk/util/Fs.cpp:43:0: warning: "S_IRUSR" redefined
 #define S_IRUSR 00400 //owner has read permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:152:0: note: this is the location of the previous definition
 #define S_IRUSR  _S_IRUSR
 ^
fusion_sdk/util/Fs.cpp:44:0: warning: "S_IWUSR" redefined
 #define S_IWUSR 00200 //owner has write permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:151:0: note: this is the location of the previous definition
 #define S_IWUSR  _S_IWUSR
 ^
fusion_sdk/util/Fs.cpp:45:0: warning: "S_IXUSR" redefined
 #define S_IXUSR 00100 ///owner has execute permission
 ^
In file included from fusion_sdk/util/Fs.h:33:0,
                 from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:150:0: note: this is the location of the previous definition
 #define S_IXUSR  _S_IXUSR
 ^
fusion_sdk/util/Fs.cpp: In static member function 'static AptErr_t Fs::listDir(const string&, std::vector<std::basic_string<char> >&, bool)':
fusion_sdk/util/Fs.cpp:1028:9: warning: unused variable 'rv' [-Wunused-variable]
   DWORD rv=0;
         ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Verbose.cpp -o fusion_sdk/util/Verbose.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Fs.h:27,
                 from fusion_sdk/util/Verbose.cpp:31:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/calvin_files/utils/src/StringUtils.h:27,
                 from fusion_sdk/util/Verbose.cpp:29:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Convert.h:32,
                 from fusion_sdk/util/RowFile.cpp:30:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/RowFile.h:31,
                 from fusion_sdk/util/RowFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o 
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
                 from fusion_sdk/util/Util.h:35,
                 from fusion_sdk/util/TableFile.h:32,
                 from fusion_sdk/util/TableFile.cpp:28:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
                 from fusion_sdk/util/RowFile.h:31,
                 from fusion_sdk/util/TableFile.h:31,
                 from fusion_sdk/util/TableFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o 
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cel_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cdf_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_cdf_extras.cpp:8:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o 
In file included from R_affx_bpmap_parser.cpp:4:0:
R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from R_affx_bpmap_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
                 from R_affx_bpmap_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from R_affx_bpmap_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_affx_bpmap_parser.cpp: In function 'SEXPREC* R_affx_get_bpmap_file(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
R_affx_bpmap_parser.cpp:482:42: warning: 'centerpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(centerpos)[j] = seqHit.getCenterPosition();
                                          ^
R_affx_bpmap_parser.cpp:479:45: warning: 'startpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
                             INTEGER(startpos)[j] = seqHit.getStartPosition();
                                             ^
R_affx_bpmap_parser.cpp:485:44: warning: 'matchscore' may be used uninitialized in this function [-Wmaybe-uninitialized]
                             REAL(matchscore)[j] = (double)seqHit.MatchScore;
                                            ^
R_affx_bpmap_parser.cpp:488:44: warning: 'probelength' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(probelength)[j] = (int)seqHit.ProbeLength;
                                            ^
R_affx_bpmap_parser.cpp:467:39: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(strand)[j] = (unsigned int)seqHit.TopStrand;
                                       ^
R_affx_bpmap_parser.cpp:475:68: warning: 'probeseq' may be used uninitialized in this function [-Wmaybe-uninitialized]
                           SET_STRING_ELT(probeseq, j, mkChar(cstr));
                                                                    ^
R_affx_bpmap_parser.cpp:502:56: warning: 'mmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         SET_VECTOR_ELT(seqObj, kk, mmy);
                                                        ^
R_affx_bpmap_parser.cpp:463:36: warning: 'mmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         INTEGER(mmx)[j] = seqHit.MMX;
                                    ^
R_affx_bpmap_parser.cpp:495:52: warning: 'pmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     SET_VECTOR_ELT(seqObj, kk, pmy);
                                                    ^
R_affx_bpmap_parser.cpp:493:52: warning: 'pmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     SET_VECTOR_ELT(seqObj, kk, pmx);
                                                    ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o 
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
                 from R_affx_clf_pgf_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/portability/affy-base-types.h:56,
                 from fusion_sdk/file/TsvFile/TsvFile.h:30,
                 from fusion_sdk/file/TsvFile/ClfFile.h:31,
                 from R_affx_clf_pgf_parser.cpp:2:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
                 from R_affx_clf_pgf_parser.cpp:2:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
     (that); /* unused var */
           ^
R_affx_clf_pgf_parser.cpp: In function 'void R_affx_get_body(affx::PgfFile*, SEXP, SEXP)':
R_affx_clf_pgf_parser.cpp:135:35: warning: 'pindices' may be used uninitialized in this function [-Wmaybe-uninitialized]
           currIndex = pindices[++i];
                                   ^
R_affx_clf_pgf_parser.cpp:132:4: warning: 'currIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
    if (nProbesets < currIndex) continue;
    ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o 
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
                 from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
                 from fusion_sdk/calvin_files/data/src/DataException.h:27,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
 #define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
 ^
In file included from ./_mingw.h:16:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
 #define WINVER 0x0502
 ^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
                 from R_affx_chp_parser.cpp:21:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
                 from R_affx_chp_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_affx_chp_parser.cpp: In function 'SEXPREC* R_affx_GetCHPGenotypingResults(affymetrix_fusion_io::FusionCHPLegacyData*)':
R_affx_chp_parser.cpp:389:33: warning: 'nocall' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 7, nocall);
                                 ^
R_affx_chp_parser.cpp:388:29: warning: 'bb' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 6, bb);
                             ^
R_affx_chp_parser.cpp:387:29: warning: 'ab' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 5, ab);
                             ^
R_affx_chp_parser.cpp:386:29: warning: 'aa' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 4, aa);
                             ^
R_affx_chp_parser.cpp:383:31: warning: 'ras1' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_ELEMENT(rval, 5, ras1);
                               ^
R_affx_chp_parser.cpp:360:16: warning: 'ras2' may be used uninitialized in this function [-Wmaybe-uninitialized]
       REAL(ras2)[i] =  f.GetRAS2();
                ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o affxparser.dll tmp.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -lws2_32 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.buildbin-libdir/affxparser/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affxparser' as affxparser_1.48.0.zip
* DONE (affxparser)

name	user	system	elapsed
applyCdfGroups	0.39	0.05	1.68
convertCdf	0.97	0.11	1.79
convertCel	0.42	0.04	2.55
createCel	1.21	0.00	2.00
findCdf	0.11	0.01	0.54
invertMap	0.93	0.08	1.02
readCdfDataFrame	2.24	0.20	4.11
readCdfHeader	0.01	0.00	0.01
readCdfNbrOfCellsPerUnitGroup	0.46	0.16	4.50
readCdfUnitNames	0	0	0
readCdfUnits	3.14	0.22	3.38
readCdfUnitsWriteMap	0.86	0.11	1.00
readCel	0.01	0.00	0.01
readCelHeader	0	0	0
readCelIntensities	0	0	0
readCelRectangle	0.57	0.01	0.63
readCelUnits	0.03	0.00	0.11
readChp	0.01	0.05	0.15
updateCel	1.44	0.12	1.86
updateCelUnits	2.11	0.32	2.99

name	user	system	elapsed
applyCdfGroups	0.30	0.05	0.34
convertCdf	1.17	0.00	1.17
convertCel	0.35	0.05	0.39
createCel	0.70	0.05	0.75
findCdf	0.08	0.01	0.09
invertMap	0.70	0.05	0.75
readCdfDataFrame	1.55	0.17	1.72
readCdfHeader	0	0	0
readCdfNbrOfCellsPerUnitGroup	0.38	0.03	0.41
readCdfUnitNames	0	0	0
readCdfUnits	3.02	0.08	3.10
readCdfUnitsWriteMap	1.00	0.06	1.09
readCel	0.01	0.00	0.02
readCelHeader	0	0	0
readCelIntensities	0	0	0
readCelRectangle	0.44	0.00	0.44
readCelUnits	0.01	0.02	0.05
readChp	0.05	0.00	0.04
updateCel	1.20	0.17	1.38
updateCelUnits	1.91	0.19	2.09