TPP 3.4.3
Dorothee Childs
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/TPP | | Last Changed Rev: 131010 / Revision: 131943 | | Last Changed Date: 2017-07-06 11:16:27 -0400 (Thu, 06 Jul 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ TIMEOUT ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf TPP.buildbin-libdir TPP.Rcheck && mkdir TPP.buildbin-libdir TPP.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TPP.buildbin-libdir TPP_3.4.3.tar.gz >TPP.Rcheck\00install.out 2>&1 && cp TPP.Rcheck\00install.out TPP-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=TPP.buildbin-libdir --install="check:TPP-install.out" --force-multiarch --no-vignettes --timings TPP_3.4.3.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/TPP.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TPP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TPP' version '3.4.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TPP' can be installed ... OK
* checking installed package size ... NOTE
installed size is 13.3Mb
sub-directories of 1Mb or more:
data 1.9Mb
example_data 8.0Mb
test_data 1.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
'doParallel:::.options' 'mefa:::rep.data.frame'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'TPP/R/TPP.R':
.onLoad calls:
packageStartupMessage(msgText, "\n")
See section 'Good practice' in '?.onAttach'.
plot_fSta_distribution: no visible binding for global variable
'..density..'
plot_pVal_distribution: no visible binding for global variable
'..density..'
Undefined global functions or variables:
..density..
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
tppQCPlotsCorrelateExperiments 15.97 0.07 16.03
tpptrSplineFitAndTest 13.78 0.04 35.50
tpp2dCreateDRplots 12.94 0.03 12.97
tpp2dSplineFitAndTest 10.70 0.04 16.90
analyzeTPPTR 7.61 0.01 29.60
tpp2dCurveFit 7.33 0.02 7.34
analyze2DTPP 6.86 0.10 6.97
tpp2dMerge2dRef 6.58 0.00 6.58
tpptrPlotSplines 5.64 0.00 15.98
tpptrFTest 5.59 0.00 15.10
tppccrPlotCurves 5.42 0.00 5.42
tpptrFitSplines 0.86 0.00 5.32
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
tpp2dCreateDRplots 19.39 0.03 19.42
tppQCPlotsCorrelateExperiments 18.22 0.02 18.23
analyzeTPPTR 15.84 0.03 42.08
tpptrSplineFitAndTest 15.69 0.00 36.67
tpp2dSplineFitAndTest 14.81 0.07 25.16
analyze2DTPP 10.08 0.05 10.14
tppccrPlotCurves 9.28 0.03 10.08
tpp2dMerge2dRef 8.39 0.06 8.45
tpptrFTest 8.33 0.00 21.45
tpptrPlotSplines 6.98 0.03 18.09
tpp2dCurveFit 6.86 0.05 6.93
analyzeTPPCCR 6.72 0.03 6.75
tpp2dCalcFractAbundance 5.46 0.00 5.48
tppccrResultTable 5.11 0.00 5.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
install for i386
* installing *source* package 'TPP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'TPP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TPP' as TPP_3.4.3.zip
* DONE (TPP)