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BioC 3.5: CHECK report for IntEREst on tokay2

This page was generated on 2017-08-16 13:26:45 -0400 (Wed, 16 Aug 2017).

Package 678/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IntEREst 1.0.0
Ali Oghabian , Mikko Frilander
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/IntEREst
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: IntEREst
Version: 1.0.0
Command: rm -rf IntEREst.buildbin-libdir IntEREst.Rcheck && mkdir IntEREst.buildbin-libdir IntEREst.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IntEREst.buildbin-libdir IntEREst_1.0.0.tar.gz >IntEREst.Rcheck\00install.out 2>&1 && cp IntEREst.Rcheck\00install.out IntEREst-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IntEREst.buildbin-libdir --install="check:IntEREst-install.out" --force-multiarch --no-vignettes --timings IntEREst_1.0.0.tar.gz
StartedAt: 2017-08-16 00:39:45 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:45:42 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 356.5 seconds
RetCode: 0
Status:  OK  
CheckDir: IntEREst.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf IntEREst.buildbin-libdir IntEREst.Rcheck && mkdir IntEREst.buildbin-libdir IntEREst.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IntEREst.buildbin-libdir IntEREst_1.0.0.tar.gz >IntEREst.Rcheck\00install.out 2>&1 && cp IntEREst.Rcheck\00install.out IntEREst-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IntEREst.buildbin-libdir --install="check:IntEREst-install.out" --force-multiarch --no-vignettes --timings IntEREst_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/IntEREst.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IntEREst/DESCRIPTION' ... OK
* this is package 'IntEREst' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IntEREst' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

IntEREst.Rcheck/00install.out:


install for i386

* installing *source* package 'IntEREst' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'IntEREst' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IntEREst' as IntEREst_1.0.0.zip
* DONE (IntEREst)

IntEREst.Rcheck/examples_i386/IntEREst-Ex.timings:

nameusersystemelapsed
addAnnotation0.540.000.55
annotateU123.460.093.78
attributes0.050.000.05
boxplot-method0.340.020.36
buildSsTypePwms000
counts-method0.050.000.05
eBayesInterest0.180.010.20
exactTestInterest0.880.000.88
getRepeatTable000
glmInterest0.420.020.45
interest2.230.002.23
interest.sequential2.020.092.11
interestResult0.020.000.02
intexIndex000
lfc0.440.000.44
mergeInterestResult0.030.000.03
plot-method0.230.020.25
qlfInterest0.540.010.55
readInterestResults0.040.000.05
referencePrepare2.380.002.37
subInterestResult0.060.000.06
treatInterest0.280.000.28
u12Boxplot0.040.000.05
u12BoxplotNb0.130.000.12
u12DensityPlot0.530.000.53
u12Index000
u12NbIndex0.070.000.08
updateRowDataCol0.050.000.04

IntEREst.Rcheck/examples_x64/IntEREst-Ex.timings:

nameusersystemelapsed
addAnnotation0.160.000.15
annotateU123.870.113.99
attributes0.030.000.04
boxplot-method0.330.000.32
buildSsTypePwms000
counts-method0.060.000.07
eBayesInterest0.20.00.2
exactTestInterest0.80.00.8
getRepeatTable000
glmInterest0.380.000.37
interest2.460.002.47
interest.sequential1.910.011.92
interestResult0.020.000.02
intexIndex000
lfc0.510.000.51
mergeInterestResult0.030.000.03
plot-method0.270.000.27
qlfInterest0.450.000.45
readInterestResults0.030.000.03
referencePrepare2.740.012.75
subInterestResult0.060.000.06
treatInterest0.190.000.19
u12Boxplot0.040.000.05
u12BoxplotNb0.100.000.09
u12DensityPlot0.370.000.38
u12Index0.020.000.01
u12NbIndex0.060.000.06
updateRowDataCol0.050.000.05