GLAD 2.40.0
Philippe Hupe
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GLAD | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf GLAD.buildbin-libdir && mkdir GLAD.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GLAD_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GLAD.buildbin-libdir --merge-multiarch GLAD_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GLAD_2.40.0.zip && rm GLAD_2.40.0.tar.gz GLAD_2.40.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 385k 3 12897 0 0 13348 0 0:00:29 --:--:-- 0:00:29 13392
100 385k 100 385k 0 0 394k 0 --:--:-- --:--:-- --:--:-- 396k
install for i386
* installing *source* package 'GLAD' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c cutree.cpp -o cutree.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c daglad.cpp -o daglad.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c distance.cpp -o distance.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c filterBkp.cpp -o filterBkp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c findCluster.cpp -o findCluster.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c glad-utils.cpp -o glad-utils.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c hclust.cpp -o hclust.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c laws.c -o laws.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c loopRemove.cpp -o loopRemove.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GLAD' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c cutree.cpp -o cutree.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c daglad.cpp -o daglad.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c distance.cpp -o distance.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c filterBkp.cpp -o filterBkp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c findCluster.cpp -o findCluster.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c glad-utils.cpp -o glad-utils.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c hclust.cpp -o hclust.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c laws.c -o laws.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/local323/include" -O2 -Wall -mtune=core2 -c loopRemove.cpp -o loopRemove.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GLAD' as GLAD_2.40.0.zip
* DONE (GLAD)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'GLAD' successfully unpacked and MD5 sums checked