BioC 3.5: CHECK report for EBSEA on tokay2

Package: EBSEA

Version: 1.4.0

Command: rm -rf EBSEA.buildbin-libdir EBSEA.Rcheck && mkdir EBSEA.buildbin-libdir EBSEA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EBSEA.buildbin-libdir EBSEA_1.4.0.tar.gz >EBSEA.Rcheck\00install.out 2>&1 && cp EBSEA.Rcheck\00install.out EBSEA-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=EBSEA.buildbin-libdir --install="check:EBSEA-install.out" --force-multiarch --no-vignettes --timings EBSEA_1.4.0.tar.gz

StartedAt: 2017-08-15 23:25:56 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 23:37:25 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 689.2 seconds

RetCode: 0

Status:  OK

CheckDir: EBSEA.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EBSEA.buildbin-libdir EBSEA.Rcheck && mkdir EBSEA.buildbin-libdir EBSEA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EBSEA.buildbin-libdir EBSEA_1.4.0.tar.gz >EBSEA.Rcheck\00install.out 2>&1 && cp EBSEA.Rcheck\00install.out EBSEA-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=EBSEA.buildbin-libdir --install="check:EBSEA-install.out" --force-multiarch --no-vignettes --timings EBSEA_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/EBSEA.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EBSEA' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBSEA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
visualizeGenes: no visible global function definition for 'mtext'
Undefined global functions or variables:
  mtext
Consider adding
  importFrom("graphics", "mtext")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
filterGenes    78.69   1.00   79.69
visualizeGenes 77.13   0.85   77.97
EBSEA          70.53   0.85   71.38
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
EBSEA          152.51   1.03  153.54
filterGenes    137.00   0.87  137.89
visualizeGenes 126.37   0.95  127.32
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/EBSEA.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'EBSEA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'EBSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBSEA' as EBSEA_1.4.0.zip
* DONE (EBSEA)

name	user	system	elapsed
EBSEA	70.53	0.85	71.38
filterCounts	0	0	0
filterGenes	78.69	1.00	79.69
origCounts	0.00	0.01	0.02
visualizeGenes	77.13	0.85	77.97

name	user	system	elapsed
EBSEA	152.51	1.03	153.54
filterCounts	0	0	0
filterGenes	137.00	0.87	137.89
origCounts	0.00	0.02	0.02
visualizeGenes	126.37	0.95	127.32