Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for BeadArrayUseCases on moscato1

This page was generated on 2016-05-28 20:31:10 -0700 (Sat, 28 May 2016).

Package 19/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BeadArrayUseCases 1.11.0
Mike Smith
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/BeadArrayUseCases
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: BeadArrayUseCases
Version: 1.11.0
Command: rm -rf BeadArrayUseCases.buildbin-libdir BeadArrayUseCases.Rcheck && mkdir BeadArrayUseCases.buildbin-libdir BeadArrayUseCases.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BeadArrayUseCases.buildbin-libdir BeadArrayUseCases_1.11.0.tar.gz >BeadArrayUseCases.Rcheck\00install.out 2>&1 && cp BeadArrayUseCases.Rcheck\00install.out BeadArrayUseCases-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BeadArrayUseCases.buildbin-libdir --install="check:BeadArrayUseCases-install.out" --force-multiarch --no-vignettes --timings BeadArrayUseCases_1.11.0.tar.gz
StartedAt: 2016-05-28 13:23:34 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 13:31:23 -0700 (Sat, 28 May 2016)
EllapsedTime: 469.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: BeadArrayUseCases.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BeadArrayUseCases.buildbin-libdir BeadArrayUseCases.Rcheck && mkdir BeadArrayUseCases.buildbin-libdir BeadArrayUseCases.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BeadArrayUseCases.buildbin-libdir BeadArrayUseCases_1.11.0.tar.gz >BeadArrayUseCases.Rcheck\00install.out 2>&1 && cp BeadArrayUseCases.Rcheck\00install.out BeadArrayUseCases-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=BeadArrayUseCases.buildbin-libdir --install="check:BeadArrayUseCases-install.out" --force-multiarch --no-vignettes --timings BeadArrayUseCases_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/BeadArrayUseCases.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BeadArrayUseCases/DESCRIPTION' ... OK
* this is package 'BeadArrayUseCases' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BeadArrayUseCases' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'beadarray::imageplot' by 'limma::imageplot' when loading 'BeadArrayUseCases'
See 'D:/biocbld/bbs-3.4-data-experiment/meat/BeadArrayUseCases.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 277.3Mb
  sub-directories of 1Mb or more:
    extdata  276.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/BeadArrayUseCases.Rcheck/00check.log'
for details.


BeadArrayUseCases.Rcheck/00install.out:


install for i386

* installing *source* package 'BeadArrayUseCases' ...
** inst
** help
No man pages found in package  'BeadArrayUseCases' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'beadarray::imageplot' by 'limma::imageplot' when loading 'BeadArrayUseCases'

install for x64

* installing *source* package 'BeadArrayUseCases' ...
** testing if installed package can be loaded
Warning: replacing previous import 'beadarray::imageplot' by 'limma::imageplot' when loading 'BeadArrayUseCases'
* MD5 sums
packaged installation of 'BeadArrayUseCases' as BeadArrayUseCases_1.11.0.zip
* DONE (BeadArrayUseCases)