Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for philr on moscato1

This page was generated on 2016-09-21 03:48:50 -0700 (Wed, 21 Sep 2016).

Package 894/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
philr 0.99.2
Justin Silverman
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/philr
Last Changed Rev: 120883 / Revision: 121152
Last Changed Date: 2016-09-12 15:35:14 -0700 (Mon, 12 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: philr
Version: 0.99.2
Command: rm -rf philr.buildbin-libdir philr.Rcheck && mkdir philr.buildbin-libdir philr.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=philr.buildbin-libdir philr_0.99.2.tar.gz >philr.Rcheck\00install.out 2>&1 && cp philr.Rcheck\00install.out philr-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=philr.buildbin-libdir --install="check:philr-install.out" --force-multiarch --no-vignettes --timings philr_0.99.2.tar.gz
StartedAt: 2016-09-20 13:54:54 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 13:56:20 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:  OK  
CheckDir: philr.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf philr.buildbin-libdir philr.Rcheck && mkdir philr.buildbin-libdir philr.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=philr.buildbin-libdir philr_0.99.2.tar.gz >philr.Rcheck\00install.out 2>&1 && cp philr.Rcheck\00install.out philr-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=philr.buildbin-libdir --install="check:philr-install.out" --force-multiarch --no-vignettes --timings philr_0.99.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/philr.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'philr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'philr' version '0.99.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'philr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
name.balance: no visible global function definition for 'as'
vote.annotation: no visible global function definition for 'is'
Undefined global functions or variables:
  as is
Consider adding
  importFrom("methods", "as", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'compositions'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/philr.Rcheck/00check.log'
for details.


philr.Rcheck/00install.out:


install for i386

* installing *source* package 'philr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'philr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'philr' as philr_0.99.2.zip
* DONE (philr)

philr.Rcheck/examples_i386/philr-Ex.timings:

nameusersystemelapsed
annotate_balance0.920.001.14
buildilrBasep000
calculate.blw0.000.000.01
clrp000
convert_to_long0.020.000.02
g.colMeans000
g.rowMeans000
ilrp000
mean_dist_to_tips000
miniclo000
name.balance0.010.000.01
name_nodenumber_conversion000
named_rtree000
philr000
phylo2sbp000
shiftp000

philr.Rcheck/examples_x64/philr-Ex.timings:

nameusersystemelapsed
annotate_balance1.360.001.36
buildilrBasep000
calculate.blw0.000.000.06
clrp000
convert_to_long0.020.000.01
g.colMeans000
g.rowMeans000
ilrp000
mean_dist_to_tips000
miniclo000
name.balance000
name_nodenumber_conversion0.020.000.02
named_rtree000
philr000
phylo2sbp000
shiftp000