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BioC 3.4: INSTALL report for makecdfenv on moscato1

This page was generated on 2016-09-21 03:41:10 -0700 (Wed, 21 Sep 2016).

Package 683/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
makecdfenv 1.49.0
James W. MacDonald
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/makecdfenv
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: makecdfenv
Version: 1.49.0
Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/makecdfenv_1.49.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=makecdfenv.buildbin-libdir --merge-multiarch makecdfenv_1.49.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL makecdfenv_1.49.0.zip && rm makecdfenv_1.49.0.tar.gz makecdfenv_1.49.0.zip
StartedAt: 2016-09-19 20:41:39 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:42:39 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 60.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/makecdfenv_1.49.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=makecdfenv.buildbin-libdir --merge-multiarch makecdfenv_1.49.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL makecdfenv_1.49.0.zip  && rm makecdfenv_1.49.0.tar.gz makecdfenv_1.49.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3075k  100 3075k    0     0  71.7M      0 --:--:-- --:--:-- --:--:-- 81.1M

install for i386

* installing *source* package 'makecdfenv' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'readQC':
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
   int typeQC;
       ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -LD:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'makecdfenv' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'readQC':
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
   int typeQC;
       ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -LD:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'makecdfenv' as makecdfenv_1.49.0.zip
* DONE (makecdfenv)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'makecdfenv' successfully unpacked and MD5 sums checked