variancePartition 1.4.2
Gabriel E. Hoffman
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/variancePartition | | Last Changed Rev: 126597 / Revision: 128728 | | Last Changed Date: 2017-02-08 11:16:26 -0500 (Wed, 08 Feb 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ ERROR ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.4.2.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.4.2.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/variancePartition.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'variancePartition/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'variancePartition' version '1.4.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'variancePartition' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitVarPartModel-method 17.60 2.51 33.00
extractVarPart 9.61 0.88 23.05
getVarianceComponents 3.90 2.66 13.47
varPartConfInf 3.91 0.00 19.64
residuals-VarParFitList-method 1.83 0.20 10.89
fitExtractVarPartModel-method 0.93 0.22 20.51
plotCorrStructure 0.87 0.06 9.11
plotPercentBars 0.72 0.03 11.46
plotVarPart-method 0.50 0.04 9.25
sortCols-method 0.51 0.03 11.13
** running examples for arch 'x64' ... ERROR
Running examples in 'variancePartition-Ex.R' failed
Warning in file(con, "r") :
cannot open file '../variancePartition-Ex_x64.Rout': Permission denied
Error in file(con, "r") : cannot open the connection
Execution halted
install for i386
* installing *source* package 'variancePartition' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'variancePartition' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'variancePartition' as variancePartition_1.4.2.zip
* DONE (variancePartition)