BioC 3.4: CHECK report for uSORT on tokay1

Package: uSORT

Version: 1.0.0

Command: rm -rf uSORT.buildbin-libdir uSORT.Rcheck && mkdir uSORT.buildbin-libdir uSORT.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=uSORT.buildbin-libdir uSORT_1.0.0.tar.gz >uSORT.Rcheck\00install.out 2>&1 && cp uSORT.Rcheck\00install.out uSORT-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=uSORT.buildbin-libdir --install="check:uSORT-install.out" --force-multiarch --no-vignettes --timings uSORT_1.0.0.tar.gz

StartedAt: 2017-04-15 01:17:26 -0400 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 01:21:58 -0400 (Sat, 15 Apr 2017)

EllapsedTime: 272.7 seconds

RetCode: 0

Status:  OK

CheckDir: uSORT.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf uSORT.buildbin-libdir uSORT.Rcheck && mkdir uSORT.buildbin-libdir uSORT.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=uSORT.buildbin-libdir uSORT_1.0.0.tar.gz >uSORT.Rcheck\00install.out 2>&1 && cp uSORT.Rcheck\00install.out uSORT-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=uSORT.buildbin-libdir --install="check:uSORT-install.out" --force-multiarch --no-vignettes --timings uSORT_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/uSORT.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'uSORT/DESCRIPTION' ... OK
* this is package 'uSORT' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'uSORT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
sWanderlust 22.79   0.03   22.97
autoSPIN    18.63   0.04   18.70
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
sWanderlust 22.0   0.04   22.08
autoSPIN    13.8   0.00   13.80
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'uSORT' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'uSORT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'uSORT' as uSORT_1.0.0.zip
* DONE (uSORT)

name	user	system	elapsed
Rwanderlust	0.66	0.02	0.83
SPIN	0.08	0.00	0.08
STS_sortingcost	0.01	0.00	0.02
autoSPIN	18.63	0.04	18.70
driving_force_gene_selection	0.01	0.00	0.01
elbow_detection	0	0	0
monocle_wrapper	0	0	0
neighborhood_sortingcost	0.07	0.00	0.07
pca_gene_selection	4.00	0.13	4.12
sWanderlust	22.79	0.03	22.97
uSORT	0	0	0
uSORT_GUI	0	0	0
uSORT_preProcess	2.71	0.03	2.73
uSORT_sorting_wrapper	2.37	0.03	2.41
uSORT_write_results	0	0	0

name	user	system	elapsed
Rwanderlust	0.85	0.02	0.94
SPIN	0.06	0.00	0.06
STS_sortingcost	0.02	0.00	0.01
autoSPIN	13.8	0.0	13.8
driving_force_gene_selection	0	0	0
elbow_detection	0	0	0
monocle_wrapper	0	0	0
neighborhood_sortingcost	0.05	0.00	0.04
pca_gene_selection	4.70	0.09	4.80
sWanderlust	22.00	0.04	22.08
uSORT	0	0	0
uSORT_GUI	0	0	0
uSORT_preProcess	3.01	0.03	3.05
uSORT_sorting_wrapper	2.44	0.04	2.48
uSORT_write_results	0	0	0