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BioC 3.4: CHECK report for spade on moscato1

This page was generated on 2016-05-02 10:52:36 -0700 (Mon, 02 May 2016).

Package 1101/1213HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spade 1.19.1
Zach Bjornson
Snapshot Date: 2016-05-01 16:20:05 -0700 (Sun, 01 May 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/spade
Last Changed Rev: 112141 / Revision: 116959
Last Changed Date: 2016-01-04 10:09:01 -0800 (Mon, 04 Jan 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ ERROR ] ERROR 

Summary

Package: spade
Version: 1.19.1
Command: rm -rf spade.buildbin-libdir spade.Rcheck && mkdir spade.buildbin-libdir spade.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spade.buildbin-libdir spade_1.19.1.tar.gz >spade.Rcheck\00install.out 2>&1 && cp spade.Rcheck\00install.out spade-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spade.buildbin-libdir --install="check:spade-install.out" --force-multiarch --no-vignettes --timings spade_1.19.1.tar.gz
StartedAt: 2016-05-01 23:17:15 -0700 (Sun, 01 May 2016)
EndedAt: 2016-05-01 23:17:28 -0700 (Sun, 01 May 2016)
EllapsedTime: 12.9 seconds
RetCode: 1
Status:  ERROR  
CheckDir: spade.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spade.buildbin-libdir spade.Rcheck && mkdir spade.buildbin-libdir spade.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spade.buildbin-libdir spade_1.19.1.tar.gz >spade.Rcheck\00install.out 2>&1 && cp spade.Rcheck\00install.out spade-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spade.buildbin-libdir --install="check:spade-install.out" --force-multiarch --no-vignettes --timings spade_1.19.1.tar.gz
###
##############################################################################
##############################################################################

spade.Rcheck/00install.out:


install for i386

* installing *source* package 'spade' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c cluster.cc -o cluster.o
cluster.cc: In function 'void {anonymous}::cluster(const Data_t*, std::size_t, std::size_t, std::size_t, {anonymous}::Idx_t*)':
cluster.cc:253:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
      for (size_t i=0; i < (c_end - c_beg); i++) {
                         ^
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c downsample.cc -o downsample.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c spade.cc -o spade.o
spade.cc: In function 'void R_init_spade(DllInfo*)':
spade.cc:7:32: warning: unused variable '_CallFun' [-Wunused-variable]
   static const R_CallMethodDef _CallFun[] = {
                                ^
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c upsample.cc -o upsample.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o spade.dll tmp.def cluster.o downsample.o spade.o upsample.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/spade.buildbin-libdir/spade/libs/i386
** R
** inst
** preparing package for lazy loading
Error : package 'RcppEigen' is not installed for 'arch = i386'
ERROR: lazy loading failed for package 'spade'
* removing 'D:/biocbld/bbs-3.4-bioc/meat/spade.buildbin-libdir/spade'
Warning: running command 'D:/biocbld/bbs-3.4-bioc/R/bin/i386/Rcmd.exe INSTALL --library=spade.buildbin-libdir spade_1.19.1.tar.gz --no-multiarch' had status 1