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BioC 3.4: CHECK report for ropls on tokay1

This page was generated on 2017-04-15 16:20:09 -0400 (Sat, 15 Apr 2017).

Package 1074/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.6.2
Etienne A. Thevenot
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/ropls
Last Changed Rev: 123219 / Revision: 128728
Last Changed Date: 2016-11-01 04:52:53 -0400 (Tue, 01 Nov 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ropls
Version: 1.6.2
Command: rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.6.2.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.6.2.tar.gz
StartedAt: 2017-04-15 00:36:37 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 00:38:16 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 99.4 seconds
RetCode: 0
Status:  OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.6.2.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.6.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/ropls.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.6.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ropls.Rcheck/00install.out:


install for i386

* installing *source* package 'ropls' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ropls' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ropls' as ropls_1.6.2.zip
* DONE (ropls)

ropls.Rcheck/examples_i386/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.160.000.16
coef1.010.001.01
fitted0.900.020.92
fromW4M0.160.000.15
getLoadingMN0.870.010.89
getPcaVarVn0.090.020.11
getScoreMN0.720.010.74
getSubsetVi0.030.030.06
getSummaryDF0.720.020.73
getVipVn0.840.040.90
getWeightMN0.670.040.75
opls-class2.210.072.28
opls2.030.102.13
plot0.860.141.00
predict0.070.010.08
print0.780.000.78
residuals0.480.030.51
ropls-package1.560.051.61
show0.790.000.78
strF0.010.000.02
tested0.060.000.07
toW4M0.190.000.25

ropls.Rcheck/examples_x64/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.240.000.24
coef1.360.011.37
fitted1.120.001.14
fromW4M0.130.000.13
getLoadingMN0.920.020.94
getPcaVarVn0.090.010.11
getScoreMN0.920.000.92
getSubsetVi0.080.020.09
getSummaryDF0.890.010.91
getVipVn0.970.000.97
getWeightMN1.170.031.21
opls-class2.830.082.90
opls2.530.062.60
plot1.000.221.21
predict0.10.00.1
print0.860.020.87
residuals0.560.000.57
ropls-package2.050.042.09
show0.900.000.91
strF0.020.000.01
tested0.060.030.09
toW4M0.200.000.21