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BioC 3.4: CHECK report for rols on moscato1

This page was generated on 2016-09-21 03:44:12 -0700 (Wed, 21 Sep 2016).

Package 1043/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rols 2.1.3
Laurent Gatto
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rols
Last Changed Rev: 121016 / Revision: 121152
Last Changed Date: 2016-09-16 14:30:02 -0700 (Fri, 16 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rols
Version: 2.1.3
Command: rm -rf rols.buildbin-libdir rols.Rcheck && mkdir rols.buildbin-libdir rols.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rols.buildbin-libdir rols_2.1.3.tar.gz >rols.Rcheck\00install.out 2>&1 && cp rols.Rcheck\00install.out rols-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=rols.buildbin-libdir --install="check:rols-install.out" --force-multiarch --no-vignettes --timings rols_2.1.3.tar.gz
StartedAt: 2016-09-20 15:44:11 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 16:07:40 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 1409.0 seconds
RetCode: 0
Status:  OK  
CheckDir: rols.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rols.buildbin-libdir rols.Rcheck && mkdir rols.buildbin-libdir rols.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rols.buildbin-libdir rols_2.1.3.tar.gz >rols.Rcheck\00install.out 2>&1 && cp rols.Rcheck\00install.out rols-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=rols.buildbin-libdir --install="check:rols-install.out" --force-multiarch --no-vignettes --timings rols_2.1.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/rols.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rols/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rols' version '2.1.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rols' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
Term-class       101.60   0.94  277.85
Properties-class   2.30   0.05   12.55
CVParam-class      0.66   0.09   21.20
Ontology-class     0.40   0.00    5.14
OlsSearch-class    0.25   0.00    7.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
Term-class       112.37   0.89  289.97
Properties-class   2.72   0.00   12.92
CVParam-class      0.86   0.03   21.28
OlsSearch-class    0.25   0.01    7.83
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

rols.Rcheck/00install.out:


install for i386

* installing *source* package 'rols' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'lapply' from package 'base' in package 'rols'
Creating a generic function for 'all.equal' from package 'base' in package 'rols'
Creating a generic function for 'unique' from package 'base' in package 'rols'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'rols' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rols' as rols_2.1.3.zip
* DONE (rols)

rols.Rcheck/examples_i386/rols-Ex.timings:

nameusersystemelapsed
CVParam-class 0.66 0.0921.20
OlsSearch-class0.250.007.98
Ontology-class0.400.005.14
Properties-class 2.30 0.0512.55
Term-class101.60 0.94277.85

rols.Rcheck/examples_x64/rols-Ex.timings:

nameusersystemelapsed
CVParam-class 0.86 0.0321.28
OlsSearch-class0.250.017.83
Ontology-class0.480.024.88
Properties-class 2.72 0.0012.92
Term-class112.37 0.89289.97