qpgraph 2.7.1
Robert Castelo
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/qpgraph | | Last Changed Rev: 117556 / Revision: 121152 | | Last Changed Date: 2016-05-16 17:21:54 -0700 (Mon, 16 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/qpgraph_2.7.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=qpgraph.buildbin-libdir --merge-multiarch qpgraph_2.7.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.7.1.zip && rm qpgraph_2.7.1.tar.gz qpgraph_2.7.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'qpgraph' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
G = LOGICAL(GR);
^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_fast_edge_nrr':
D:/biocbld/BBS-3˜1.4-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define pt Rf_pt
^
D:/biocbld/BBS-3˜1.4-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
#define df Rf_df
^
qpgraph.c:5082:16: note: in expansion of macro 'df'
int k, l, df, n_upper_tri;
^
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
SEXP pcorR;
^
qpgraph.c: In function 'qp_fast_ci_test_hmgm':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*partial_eta_squared = (rss1 - rss2) / rss0;
^
qpgraph.c:3703:11: note: 'rss1' was declared here
double rss1, rss2;
^
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lRblas -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph'
Creating a generic function from function 'rmvnorm' in package 'qpgraph'
Creating a generic function from function 'sim.cross' in package 'qpgraph'
** help
*** installing help indices
** building package indices
** installing vignettes
'eQTLnetworks.Rnw'
'qpTxRegNet.Rnw'
'qpgraphSimulate.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'qpgraph' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cliquer.c -o cliquer.o
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
G = LOGICAL(GR);
^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_edge_nrr':
D:/biocbld/BBS-3˜1.4-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define pt Rf_pt
^
D:/biocbld/BBS-3˜1.4-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
#define df Rf_df
^
qpgraph.c:5082:16: note: in expansion of macro 'df'
int k, l, df, n_upper_tri;
^
qpgraph.c: In function 'qp_fast_edge_nrr':
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
SEXP pcorR;
^
qpgraph.c: In function 'qp_ci_test_hmgm.isra.9':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*partial_eta_squared = (rss1 - rss2) / rss0;
^
qpgraph.c:3703:11: note: 'rss1' was declared here
double rss1, rss2;
^
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lRblas -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qpgraph' as qpgraph_2.7.1.zip
* DONE (qpgraph)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'qpgraph' successfully unpacked and MD5 sums checked