metabomxtr 1.8.0
Michael Nodzenski
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/metabomxtr | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings metabomxtr_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.4-bioc/meat/metabomxtr.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘metabomxtr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metabomxtr’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metabomxtr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixnorm: no visible global function definition for ‘as.formula’
mxtrmodLL: no visible global function definition for ‘dnorm’
mxtrmodLL: no visible global function definition for ‘pnorm’
mxtrmodLRT: no visible global function definition for ‘pchisq’
mxtrmodstart: no visible global function definition for ‘sd’
runMxtrmod : <anonymous>: no visible global function definition for
‘coef’
xdesign,ExpressionSet: no visible binding for global variable ‘na.pass’
xdesign,ExpressionSet: no visible global function definition for
‘model.matrix’
xdesign,ExpressionSet: no visible global function definition for
‘formula’
xdesign,data.frame: no visible binding for global variable ‘na.pass’
xdesign,data.frame: no visible global function definition for
‘model.matrix’
xdesign,data.frame: no visible global function definition for ‘formula’
xdesign,matrix: no visible binding for global variable ‘na.pass’
xdesign,matrix: no visible global function definition for
‘model.matrix’
xdesign,matrix: no visible global function definition for ‘formula’
zdesign,ExpressionSet: no visible binding for global variable ‘na.pass’
zdesign,ExpressionSet: no visible global function definition for
‘model.matrix’
zdesign,ExpressionSet: no visible global function definition for
‘formula’
zdesign,data.frame: no visible binding for global variable ‘na.pass’
zdesign,data.frame: no visible global function definition for
‘model.matrix’
zdesign,data.frame: no visible global function definition for ‘formula’
zdesign,matrix: no visible binding for global variable ‘na.pass’
zdesign,matrix: no visible global function definition for
‘model.matrix’
zdesign,matrix: no visible global function definition for ‘formula’
Undefined global functions or variables:
as.formula coef dnorm formula model.matrix na.pass pchisq pnorm sd
Consider adding
importFrom("stats", "as.formula", "coef", "dnorm", "formula",
"model.matrix", "na.pass", "pchisq", "pnorm", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.4-bioc/meat/metabomxtr.Rcheck/00check.log’
for details.