genomation 1.5.5
Altuna Akalin , Vedran Franke
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genomation | | Last Changed Rev: 119336 / Revision: 121152 | | Last Changed Date: 2016-07-13 04:58:20 -0700 (Wed, 13 Jul 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/genomation_1.5.5.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=genomation.buildbin-libdir --merge-multiarch genomation_1.5.5.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL genomation_1.5.5.zip && rm genomation_1.5.5.tar.gz genomation_1.5.5.zip
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install for i386
* installing *source* package 'genomation' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/include" -I"c:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/include" -I"c:/local323/include" -O2 -Wall -mtune=core2 -c idxstats.cpp -o idxstats.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o idxstats.o -LD:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/lib/i386 -lhts -lz -pthread -lws2_32 -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/genomation.buildbin-libdir/genomation/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'GenomationManual-knitr.Rmd' using 'UTF-8'
** testing if installed package can be loaded
install for x64
* installing *source* package 'genomation' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/include" -I"c:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/include" -I"c:/local323/include" -O2 -Wall -mtune=core2 -c idxstats.cpp -o idxstats.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o idxstats.o -LD:/biocbld/bbs-3.4-bioc/R/library/Rhtslib/lib/x64 -lhts -lz -pthread -lws2_32 -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/genomation.buildbin-libdir/genomation/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomation' as genomation_1.5.5.zip
* DONE (genomation)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'genomation' successfully unpacked and MD5 sums checked