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BioC 3.4: INSTALL report for crlmm on moscato1

This page was generated on 2016-09-21 03:42:44 -0700 (Wed, 21 Sep 2016).

Package 272/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crlmm 1.31.2
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm
Last Changed Rev: 117175 / Revision: 121152
Last Changed Date: 2016-05-05 23:53:13 -0700 (Thu, 05 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: crlmm
Version: 1.31.2
Command: rm -rf crlmm.buildbin-libdir && mkdir crlmm.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/crlmm_1.31.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=crlmm.buildbin-libdir --merge-multiarch crlmm_1.31.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL crlmm_1.31.2.zip && rm crlmm_1.31.2.tar.gz crlmm_1.31.2.zip
StartedAt: 2016-09-19 21:03:05 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 21:03:58 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 52.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf crlmm.buildbin-libdir && mkdir crlmm.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/crlmm_1.31.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=crlmm.buildbin-libdir --merge-multiarch crlmm_1.31.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL crlmm_1.31.2.zip  && rm crlmm_1.31.2.tar.gz crlmm_1.31.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3493k  100 3493k    0     0  73.5M      0 --:--:-- --:--:-- --:--:-- 79.3M

install for i386

* installing *source* package 'crlmm' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'AffyGW.Rnw' 
   'CopyNumberOverview.Rnw' 
   'IlluminaPreprocessCN.Rnw' 
   'Infrastructure.Rnw' 
   'genotyping.Rnw' 
   'gtypeDownstream.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'crlmm' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.31.2.zip
* DONE (crlmm)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'crlmm' successfully unpacked and MD5 sums checked