annotatr 1.0.3
Raymond G. Cavalcante
| Snapshot Date: 2017-04-11 17:17:07 -0400 (Tue, 11 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/annotatr | | Last Changed Rev: 126491 / Revision: 128559 | | Last Changed Date: 2017-02-06 16:21:22 -0500 (Mon, 06 Feb 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf annotatr.buildbin-libdir annotatr.Rcheck && mkdir annotatr.buildbin-libdir annotatr.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=annotatr.buildbin-libdir annotatr_1.0.3.tar.gz >annotatr.Rcheck\00install.out 2>&1 && cp annotatr.Rcheck\00install.out annotatr-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=annotatr.buildbin-libdir --install="check:annotatr-install.out" --force-multiarch --no-vignettes --timings annotatr_1.0.3.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/annotatr.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'annotatr/DESCRIPTION' ... OK
* this is package 'annotatr' version '1.0.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'annotatr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot_coannotations: no visible binding for global variable '.'
plot_numerical_coannotations: no visible binding for global variable
'.'
Undefined global functions or variables:
.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plot_coannotations 15.50 0.27 17.72
plot_numerical_coannotations 12.08 0.33 13.81
build_annotations 10.64 0.48 13.11
summarize_categorical 7.99 0.33 9.53
summarize_numerical 7.25 0.31 9.13
annotate_regions 6.03 1.03 10.94
plot_categorical 5.64 0.21 8.39
plot_numerical 4.41 0.33 6.39
summarize_annotations 4.28 0.34 7.55
plot_annotation 3.48 0.35 6.88
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plot_coannotations 17.11 0.25 18.89
build_annotations 13.74 0.50 18.60
plot_numerical_coannotations 11.32 0.20 15.72
annotate_regions 9.77 1.09 14.00
plot_categorical 6.96 0.25 13.30
summarize_numerical 6.71 0.22 8.03
summarize_categorical 6.01 0.29 7.57
plot_numerical 5.66 0.33 7.03
plot_annotation 4.12 0.17 6.54
summarize_annotations 4.00 0.18 7.28
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.4-bioc/meat/annotatr.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'annotatr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'annotatr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'annotatr' as annotatr_1.0.3.zip
* DONE (annotatr)