Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.4: INSTALL report for Rgraphviz on moscato1

This page was generated on 2016-09-21 03:41:11 -0700 (Wed, 21 Sep 2016).

Package 1013/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rgraphviz 2.17.0
Kasper Daniel Hansen
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Rgraphviz
Version: 2.17.0
Command: rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/Rgraphviz_2.17.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=Rgraphviz.buildbin-libdir --merge-multiarch Rgraphviz_2.17.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL Rgraphviz_2.17.0.zip && rm Rgraphviz_2.17.0.tar.gz Rgraphviz_2.17.0.zip
StartedAt: 2016-09-19 20:47:25 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:49:13 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 107.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/Rgraphviz_2.17.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=Rgraphviz.buildbin-libdir --merge-multiarch Rgraphviz_2.17.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL Rgraphviz_2.17.0.zip  && rm Rgraphviz_2.17.0.tar.gz Rgraphviz_2.17.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 6780k  100 6780k    0     0  93.0M      0 --:--:-- --:--:-- --:--:--  100M

install for i386

* installing *source* package 'Rgraphviz' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
     Agnode_t *head, *tail, *curNode;
                             ^
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libwin/i386/lib/libxdot.a libwin/i386/lib/libgvplugin_dot_layout.a libwin/i386/lib/libgvplugin_neato_layout.a libwin/i386/lib/libgvplugin_core.a libwin/i386/lib/libgvc.a libwin/i386/lib/libpathplan.a libwin/i386/lib/libgraph.a libwin/i386/lib/libcdt.a -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
sed "s!@GRAPHVIZ_VERSION@!"2.28.0"!" ../R/graphviz_build_version.R.in |\
  sed "s!@GRAPHVIZ_BUNDLED@!TRUE!" > ../R/graphviz_build_version.R
installing to D:/biocbld/bbs-3.4-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'tail' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'lines' from package 'graphics' in package 'Rgraphviz'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Rgraphviz' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
     Agnode_t *head, *tail, *curNode;
                             ^
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libwin/x64/lib/libxdot.a libwin/x64/lib/libgvplugin_dot_layout.a libwin/x64/lib/libgvplugin_neato_layout.a libwin/x64/lib/libgvplugin_core.a libwin/x64/lib/libgvc.a libwin/x64/lib/libpathplan.a libwin/x64/lib/libgraph.a libwin/x64/lib/libcdt.a -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
sed "s!@GRAPHVIZ_VERSION@!"2.28.0"!" ../R/graphviz_build_version.R.in |\
  sed "s!@GRAPHVIZ_BUNDLED@!TRUE!" > ../R/graphviz_build_version.R
installing to D:/biocbld/bbs-3.4-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rgraphviz' as Rgraphviz_2.17.0.zip
* DONE (Rgraphviz)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'Rgraphviz' successfully unpacked and MD5 sums checked