RamiGO 1.19.0
Markus Schroeder
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RamiGO | | Last Changed Rev: 120634 / Revision: 121152 | | Last Changed Date: 2016-08-31 17:16:22 -0700 (Wed, 31 Aug 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | [ OK ] | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RamiGO
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* checking for file ‘RamiGO/DESCRIPTION’ ... OK
* preparing ‘RamiGO’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
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[]\T1/ptm/m/n/10 See [][]$\T1/zi4/m/n/10 http : / / rcytoscape . systemsbiology
. net / versions / current/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http :
/ / www . bioconductor .
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[]\T1/zi4/m/n/9 ss <- getAmigoTree(goIDs=goIDs,color=color,filename="example",
picType="svg",saveResult=FALSE)[]
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[]\T1/zi4/m/n/9 dd <- getAmigoTree(goIDs=goIDs,color=color,filename="example",
picType="dot",saveResult=FALSE)[]
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[]\T1/zi4/m/n/9 #goIDs <- c("GO:0051130","GO:0050789","GO:0019912","GO:0016301
","GO:0003824","GO:0005783","GO:0043229")[]
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Output written on Rd2.pdf (12 pages, 130953 bytes).
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[]\T1/ptm/m/n/10 See [][]$\T1/zi4/m/n/10 http : / / rcytoscape . systemsbiology
. net / versions / current/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http :
/ / www . bioconductor .
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llette MA, Paulovich A, Pomeroy
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[]\T1/zi4/m/n/9 ss <- getAmigoTree(goIDs=goIDs,color=color,filename="example",
picType="svg",saveResult=FALSE)[]
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[]\T1/zi4/m/n/9 dd <- getAmigoTree(goIDs=goIDs,color=color,filename="example",
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[]\T1/zi4/m/n/9 #goIDs <- c("GO:0051130","GO:0050789","GO:0019912","GO:0016301
","GO:0003824","GO:0005783","GO:0043229")[]
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Output written on Rd2.pdf (13 pages, 156860 bytes).
Transcript written on Rd2.log.
Saving output to ‘/tmp/RtmpM5y1O0/Rbuild42175e7fef1/RamiGO/build/RamiGO.pdf’ ...
Done
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘RamiGO_1.19.0.tar.gz’