BioC 3.4: CHECK report for MultiAssayExperiment on morelia

Package: MultiAssayExperiment

Version: 1.0.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_1.0.1.tar.gz

StartedAt: 2017-04-15 05:27:45 -0700 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 05:30:13 -0700 (Sat, 15 Apr 2017)

EllapsedTime: 148.1 seconds

RetCode: 0

Status:  OK

CheckDir: MultiAssayExperiment.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_1.0.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.4-bioc/meat/MultiAssayExperiment.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MultiAssayExperiment/DESCRIPTION’ ... OK
* this is package ‘MultiAssayExperiment’ version ‘1.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiAssayExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘MultiAssayExperiment’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MultiAssayExperiment)

name	user	system	elapsed
API	0.001	0.000	0.001
ExperimentList-class	0.022	0.003	0.025
ExperimentList	0.126	0.002	0.127
MultiAssayExperiment-class	0.159	0.004	0.164
MultiAssayExperiment	0.754	0.018	0.943
PrepMultiAssay	0.973	0.029	1.003
RangedRaggedAssay	0.142	0.004	0.146
assay-RangedRaggedAssay-ANY-method	0.390	0.006	0.396
experiments-set	0.474	0.008	0.482
experiments	0.426	0.006	0.433
getHits	1.101	0.014	1.172
hasAssay	0.006	0.000	0.006
mapToList	0.074	0.001	0.074
sampleMap-set	0.468	0.008	0.476
sampleMap	0.029	0.001	0.030
subsetByAssay	0.659	0.011	0.670
subsetByColumn	0.978	0.009	0.990
subsetByRow	1.034	0.008	1.045