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BioC 3.4: BUILD BIN report for GeneNetworkBuilder on morelia

This page was generated on 2016-09-12 03:51:18 -0700 (Mon, 12 Sep 2016).

Package 471/1251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneNetworkBuilder 1.15.3
Jianhong Ou
Snapshot Date: 2016-09-10 19:15:46 -0700 (Sat, 10 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneNetworkBuilder
Last Changed Rev: 117512 / Revision: 120833
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  ERROR  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  ERROR [ OK ]

Summary

Package: GeneNetworkBuilder
Version: 1.15.3
Command: rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.15.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
StartedAt: 2016-09-11 14:22:35 -0700 (Sun, 11 Sep 2016)
EndedAt: 2016-09-11 14:22:42 -0700 (Sun, 11 Sep 2016)
EllapsedTime: 6.5 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneNetworkBuilder_1.15.3.tgz
PackageFileSize: 3.145 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.15.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneNetworkBuilder.buildbin-libdir GeneNetworkBuilder_1.15.3.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneNetworkBuilder’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c geneTree.cpp -o geneTree.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c nodefilter.cpp -o nodefilter.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneNetworkBuilder.so geneTree.o nodefilter.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneNetworkBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"