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BioC 3.4: BUILD report for GENE.E on tokay1

This page was generated on 2017-04-15 16:17:50 -0400 (Sat, 15 Apr 2017).

Package 477/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENE.E 1.14.0
Joshua Gould
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/GENE.E
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded [ ERROR ] skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: GENE.E
Version: 1.14.0
Command: chmod a+r GENE.E -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data GENE.E
StartedAt: 2017-04-14 19:25:56 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 19:26:20 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 24.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r GENE.E -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data GENE.E
###
##############################################################################
##############################################################################


* checking for file 'GENE.E/DESCRIPTION' ... OK
* preparing 'GENE.E':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.4-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Error in H5Dcreate(loc$H5Identifier, dataset, tid, sid, dcpl = dcpl) : 
  HDF5. Dataset. Unable to initialize object.
Error in H5Dopen(h5loc, name) : HDF5. Dataset. Object not found.
Error in is(h5id, "H5IdComponent") : object 'h5dataset' not found
Error in is(h5id, "H5IdComponent") : object 'h5dataset' not found
Error in is(h5id, "H5IdComponent") : object 'h5spaceFile' not found
Error in is(h5id, "H5IdComponent") : object 'h5dataset' not found
Quitting from lines 46-48 (GENE.E-vignette.Rmd) 
Error: processing vignette 'GENE.E-vignette.Rmd' failed with diagnostics:
Failed to connect to taipan.fhcrc.org port 9998: Connection refused
Execution halted