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BioC 3.4: BUILD report for BSgenome on tokay1

This page was generated on 2017-04-15 16:14:58 -0400 (Sat, 15 Apr 2017).

Package 145/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.42.0
H. Pagès
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/BSgenome
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ OK ] WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BSgenome
Version: 1.42.0
Command: chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2017-04-14 18:42:32 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 18:46:07 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 214.7 seconds
RetCode: 0
Status:  OK  
PackageFile: BSgenome_1.42.0.tar.gz
PackageFileSize: 5.78 MiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
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* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/tests' is empty
* building 'BSgenome_1.42.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh'