aracne.networks 0.99.7
Federico M. Giorgi , Mariano Alvarez
| Snapshot Date: 2016-09-21 09:20:16 -0700 (Wed, 21 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/aracne.networks | | Last Changed Rev: 3864 / Revision: 3889 | | Last Changed Date: 2016-08-22 06:56:45 -0700 (Mon, 22 Aug 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf aracne.networks.buildbin-libdir aracne.networks.Rcheck && mkdir aracne.networks.buildbin-libdir aracne.networks.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=aracne.networks.buildbin-libdir aracne.networks_0.99.7.tar.gz >aracne.networks.Rcheck\00install.out 2>&1 && cp aracne.networks.Rcheck\00install.out aracne.networks-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=aracne.networks.buildbin-libdir --install="check:aracne.networks-install.out" --force-multiarch --no-vignettes --timings aracne.networks_0.99.7.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/aracne.networks.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aracne.networks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'aracne.networks' version '0.99.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'aracne.networks' can be installed ... OK
* checking installed package size ... NOTE
installed size is 191.3Mb
sub-directories of 1Mb or more:
data 191.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
regulonblca.rda 8.2Mb 6.9Mb xz
regulonbrca.rda 5.7Mb 4.7Mb xz
reguloncesc.rda 9.6Mb 7.9Mb xz
reguloncoad.rda 7.0Mb 5.8Mb xz
regulonesca.rda 8.7Mb 7.0Mb xz
regulongbm.rda 9.2Mb 7.1Mb xz
regulonhnsc.rda 7.2Mb 6.0Mb xz
regulonkirc.rda 5.9Mb 4.9Mb xz
regulonkirp.rda 7.8Mb 6.5Mb xz
regulonlaml.rda 8.8Mb 7.0Mb xz
regulonlihc.rda 8.0Mb 6.7Mb xz
regulonluad.rda 6.8Mb 5.7Mb xz
regulonlusc.rda 7.7Mb 6.5Mb xz
regulonov.rda 10.5Mb 8.6Mb xz
regulonpaad.rda 8.7Mb 7.1Mb xz
regulonpcpg.rda 9.9Mb 7.8Mb xz
regulonprad.rda 5.6Mb 4.7Mb xz
regulonread.rda 9.4Mb 7.6Mb xz
regulonsarc.rda 8.8Mb 7.2Mb xz
regulonstad.rda 9.7Mb 8.1Mb xz
regulontgct.rda 7.7Mb 6.3Mb xz
regulonthca.rda 5.2Mb 4.3Mb xz
regulonthym.rda 6.7Mb 5.3Mb xz
regulonucec.rda 8.2Mb 6.9Mb xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
aracne.networks-package 3.37 0.04 10.08
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbld/bbs-3.4-data-experiment/meat/aracne.networks.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'aracne.networks' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'aracne.networks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aracne.networks' as aracne.networks_0.99.7.zip
* DONE (aracne.networks)