Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 3.4: BUILD report for sevenbridges on moscato1

This page was generated on 2016-09-21 03:47:33 -0700 (Wed, 21 Sep 2016).

Package 1104/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sevenbridges 1.3.8
Tengfei Yin
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sevenbridges
Last Changed Rev: 120873 / Revision: 121152
Last Changed Date: 2016-09-12 08:31:47 -0700 (Mon, 12 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: sevenbridges
Version: 1.3.8
Command: chmod a+r sevenbridges -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sevenbridges
StartedAt: 2016-09-20 02:09:16 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 02:10:56 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 99.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r sevenbridges -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sevenbridges
###
##############################################################################
##############################################################################


* checking for file 'sevenbridges/DESCRIPTION' ... OK
* preparing 'sevenbridges':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR

Attaching package: 'sevenbridges'

The following object is masked from 'package:BiocStyle':

    output

Quitting from lines 738-758 (apps.Rmd) 
Error: processing vignette 'apps.Rmd' failed with diagnostics:
lexical error: invalid bytes in UTF8 string.
          "Tag name to be used as exonsÂ’ transcript-parents.",        
                     (right here) ------^
Execution halted