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BioC 3.4: BUILD BIN report for iChip on morelia

This page was generated on 2016-09-21 03:50:31 -0700 (Wed, 21 Sep 2016).

Package 598/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iChip 1.27.0
Qianxing Mo
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/iChip
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: iChip
Version: 1.27.0
Command: rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iChip_1.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iChip.buildbin-libdir
StartedAt: 2016-09-20 15:05:37 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:05:40 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 3.0 seconds
RetCode: 0
Status:  OK 
PackageFile: iChip_1.27.0.tgz
PackageFileSize: 1.821 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iChip_1.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iChip.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iChip.buildbin-libdir iChip_1.27.0.tar.gz'
>>>>>>> 

* installing *source* package ‘iChip’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c iChip.c -o iChip.o
iChip.c:24:69: warning: unused variable 'sdsignal' [-Wunused-variable]
  double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal;
                                                                    ^
iChip.c:24:61: warning: unused variable 'sdnoise' [-Wunused-variable]
  double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal;
                                                            ^
iChip.c:188:20: warning: unused variable 'j' [-Wunused-variable]
  int sampleSize,i,j,r,nnoise,nsignal,state,nrowm1,sumxx,rm1;
                   ^
3 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iChip.so iChip.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/iChip.buildbin-libdir/iChip/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iChip)


>>>>>>> 
>>>>>>> FIXING LINKS FOR iChip.buildbin-libdir/iChip/libs//iChip.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"