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BioC 3.4: BUILD BIN report for GenomicFeatures on moscato1

This page was generated on 2016-09-21 03:42:52 -0700 (Wed, 21 Sep 2016).

Package 494/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.25.16
Bioconductor Package Maintainer
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicFeatures
Last Changed Rev: 119544 / Revision: 121152
Last Changed Date: 2016-07-22 01:14:45 -0700 (Fri, 22 Jul 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicFeatures
Version: 1.25.16
Command: cd GenomicFeatures.buildbin-libdir/GenomicFeatures && zip -r ../../GenomicFeatures_1.25.16.zip . & cd ../..
StartedAt: 2016-09-20 19:05:39 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 19:05:54 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 15.0 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicFeatures_1.25.16.zip
PackageFileSize: 2.275 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd GenomicFeatures.buildbin-libdir/GenomicFeatures && zip -r ../../GenomicFeatures_1.25.16.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (188 bytes security) (deflated 56%)
  adding: DESCRIPTION (188 bytes security) (deflated 53%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/GenomicFeatures.pdf (188 bytes security) (deflated 11%)
  adding: doc/GenomicFeatures.R (188 bytes security) (deflated 77%)
  adding: doc/GenomicFeatures.Rnw (188 bytes security) (deflated 65%)
  adding: doc/index.html (188 bytes security) (deflated 59%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/Biomart_Ensembl_sample.sqlite (188 bytes security) (deflated 78%)
  adding: extdata/cD.exByEdge-SG-Vig.Rda (188 bytes security) (deflated 1%)
  adding: extdata/cD.exsByGenes-SG-Vig.Rda (188 bytes security) (deflated 2%)
  adding: extdata/events.Rda (188 bytes security) (stored 0%)
  adding: extdata/FeatureDb.sqlite (188 bytes security) (deflated 62%)
  adding: extdata/GFF3_files/ (208 bytes security) (stored 0%)
  adding: extdata/GFF3_files/a.gff3 (188 bytes security) (deflated 88%)
  adding: extdata/GFF3_files/a.sqlite (188 bytes security) (deflated 69%)
  adding: extdata/GFF3_files/dmel-1000-r5.11.filtered.gff (188 bytes security) (deflated 88%)
  adding: extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite (188 bytes security) (deflated 67%)
  adding: extdata/GFF3_files/NC_011025.gff (188 bytes security) (deflated 81%)
  adding: extdata/GFF3_files/TheCanonicalGene_v1.gff3 (188 bytes security) (deflated 81%)
  adding: extdata/GFF3_files/TheCanonicalGene_v2.gff3 (188 bytes security) (deflated 80%)
  adding: extdata/GTF_files/ (208 bytes security) (stored 0%)
  adding: extdata/GTF_files/Aedes_aegypti.partial.gtf (188 bytes security) (deflated 92%)
  adding: extdata/GTF_files/Aedes_aegypti.partial.sqlite (188 bytes security) (deflated 72%)
  adding: extdata/GTF_files/test1.gtf (188 bytes security) (deflated 80%)
  adding: extdata/hg19_knownGene_sample.rda (188 bytes security) (stored 0%)
  adding: extdata/hg19_knownGene_sample.sqlite (188 bytes security) (deflated 61%)
  adding: extdata/hg19_knownToLocusLink_sample.rda (188 bytes security) (stored 0%)
  adding: extdata/sample_ranges.rds (188 bytes security) (stored 0%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 82%)
  adding: help/GenomicFeatures.rdb (188 bytes security) (deflated 1%)
  adding: help/GenomicFeatures.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 87%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 69%)
  adding: MD5 (188 bytes security) (deflated 50%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 68%)
  adding: NEWS (188 bytes security) (deflated 66%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/GenomicFeatures (188 bytes security) (deflated 41%)
  adding: R/GenomicFeatures.rdb (188 bytes security) (deflated 24%)
  adding: R/GenomicFeatures.rdx (188 bytes security) (deflated 0%)
  adding: script/ (208 bytes security) (stored 0%)
  adding: script/maketRNAFDb.R (188 bytes security) (deflated 71%)
  adding: script/makeTxDbs.R (188 bytes security) (deflated 89%)
  adding: txdb-template/ (208 bytes security) (stored 0%)
  adding: txdb-template/DESCRIPTION (188 bytes security) (deflated 34%)
  adding: txdb-template/inst/ (208 bytes security) (stored 0%)
  adding: txdb-template/inst/extdata/ (208 bytes security) (stored 0%)
  adding: txdb-template/man/ (208 bytes security) (stored 0%)
  adding: txdb-template/man/package.Rd (188 bytes security) (deflated 47%)
  adding: txdb-template/NAMESPACE (188 bytes security) (deflated 21%)
  adding: txdb-template/R/ (208 bytes security) (stored 0%)
  adding: txdb-template/R/zzz.R (188 bytes security) (deflated 46%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/test_coordinate-mapping-methods.R (188 bytes security) (deflated 83%)
  adding: unitTests/test_disjointExons.R (188 bytes security) (deflated 57%)
  adding: unitTests/test_getPromoterSeq-methods.R (188 bytes security) (deflated 73%)
  adding: unitTests/test_makeIdsForUniqueDataFrameRows.R (188 bytes security) (deflated 53%)
  adding: unitTests/test_makeTxDb.R (188 bytes security) (deflated 76%)
  adding: unitTests/test_makeTxDbFromBiomart.R (188 bytes security) (deflated 66%)
  adding: unitTests/test_makeTxDbFromGFF.R (188 bytes security) (deflated 67%)
  adding: unitTests/test_makeTxDbFromGRanges.R (188 bytes security) (deflated 84%)
  adding: unitTests/test_makeTxDbFromUCSC.R (188 bytes security) (deflated 74%)
  adding: unitTests/test_mapIdsToRanges.R (188 bytes security) (deflated 75%)
  adding: unitTests/test_select-methods.R (188 bytes security) (deflated 80%)
  adding: unitTests/test_transcripts.R (188 bytes security) (deflated 82%)
  adding: unitTests/test_transcriptsBy.R (188 bytes security) (deflated 81%)
  adding: unitTests/test_transcriptsByOverlaps.R (188 bytes security) (deflated 81%)
  adding: unitTests/test_TxDb_seqinfo.R (188 bytes security) (deflated 74%)