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BioC experimental data: CHECK report for MSBdata on windows2.bioconductor.org

This page was generated on 2015-10-24 19:25:56 -0400 (Sat, 24 Oct 2015).

Package 168/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSBdata 0.9.0
Wolfgang Huber
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MSBdata
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: MSBdata
Version: 0.9.0
Command: rm -rf MSBdata.buildbin-libdir MSBdata.Rcheck && mkdir MSBdata.buildbin-libdir MSBdata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MSBdata.buildbin-libdir MSBdata_0.9.0.tar.gz >MSBdata.Rcheck\00install.out 2>&1 && cp MSBdata.Rcheck\00install.out MSBdata-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MSBdata.buildbin-libdir --install="check:MSBdata-install.out" --force-multiarch --no-vignettes --timings MSBdata_0.9.0.tar.gz
StartedAt: 2015-10-24 12:40:28 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:40:42 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 13.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: MSBdata.Rcheck
Warnings: 2

Command output

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###
### Running command:
###
###   rm -rf MSBdata.buildbin-libdir MSBdata.Rcheck && mkdir MSBdata.buildbin-libdir MSBdata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MSBdata.buildbin-libdir MSBdata_0.9.0.tar.gz >MSBdata.Rcheck\00install.out 2>&1 && cp MSBdata.Rcheck\00install.out MSBdata-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MSBdata.buildbin-libdir --install="check:MSBdata-install.out" --force-multiarch --no-vignettes --timings MSBdata_0.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/MSBdata.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSBdata/DESCRIPTION' ... OK
* this is package 'MSBdata' version '0.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSBdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   3.5Mb
    images    3.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'brcalymphnode' 'e100'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/MSBdata.Rcheck/00check.log'
for details.


MSBdata.Rcheck/00install.out:


install for i386

* installing *source* package 'MSBdata' ...
** data
** inst
** help
No man pages found in package  'MSBdata' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MSBdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSBdata' as MSBdata_0.9.0.zip
* DONE (MSBdata)