BioC 3.3: CHECK report for skewr on windows2.bioconductor.org

Package: skewr

Version: 1.3.0

Command: rm -rf skewr.buildbin-libdir skewr.Rcheck && mkdir skewr.buildbin-libdir skewr.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=skewr.buildbin-libdir skewr_1.3.0.tar.gz >skewr.Rcheck\00install.out 2>&1 && cp skewr.Rcheck\00install.out skewr-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=skewr.buildbin-libdir --install="check:skewr-install.out" --force-multiarch --no-vignettes --timings skewr_1.3.0.tar.gz

StartedAt: 2015-10-27 06:09:59 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 06:15:08 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 308.6 seconds

RetCode: 0

Status:  OK

CheckDir: skewr.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf skewr.buildbin-libdir skewr.Rcheck && mkdir skewr.buildbin-libdir skewr.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=skewr.buildbin-libdir skewr_1.3.0.tar.gz >skewr.Rcheck\00install.out 2>&1 && cp skewr.Rcheck\00install.out skewr-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=skewr.buildbin-libdir --install="check:skewr-install.out" --force-multiarch --no-vignettes --timings skewr_1.3.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/skewr.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'skewr/DESCRIPTION' ... OK
* this is package 'skewr' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'skewr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
subsetProbes: no visible binding for global variable
  'IlluminaHumanMethylation450kmanifest'
subsetProbes: no visible binding for global variable 'Color'
Undefined global functions or variables:
  Color IlluminaHumanMethylation450kmanifest
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'c:/biocbld/bbs-3.3-bioc/meat/skewr.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'skewr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'skewr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'skewr' as skewr_1.3.0.zip
* DONE (skewr)

name	user	system	elapsed
getBarcodes	0.01	0.00	0.02
getMethyLumiSet	0	0	0
getSNparams	0	0	0
panelPlots	0	0	0
preprocess	0	0	0
subsetProbes	3.56	0.15	3.72

name	user	system	elapsed
getBarcodes	0.03	0.00	0.03
getMethyLumiSet	0	0	0
getSNparams	0	0	0
panelPlots	0	0	0
preprocess	0	0	0
subsetProbes	4.26	0.12	4.39