BioC 3.3: CHECK report for rols on windows2.bioconductor.org
This page was generated on 2015-10-27 12:15:02 -0400 (Tue, 27 Oct 2015).
rols 1.13.0
Laurent Gatto
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rols | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
Summary
| Package: rols
|
| Version: 1.13.0
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| Command: rm -rf rols.buildbin-libdir rols.Rcheck && mkdir rols.buildbin-libdir rols.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rols.buildbin-libdir rols_1.13.0.tar.gz >rols.Rcheck\00install.out 2>&1 && cp rols.Rcheck\00install.out rols-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rols.buildbin-libdir --install="check:rols-install.out" --force-multiarch --no-vignettes --timings rols_1.13.0.tar.gz
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| StartedAt: 2015-10-27 05:43:59 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 05:47:16 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 197.4 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: rols.Rcheck
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| Warnings: 0
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Command output
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###
### Running command:
###
### rm -rf rols.buildbin-libdir rols.Rcheck && mkdir rols.buildbin-libdir rols.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rols.buildbin-libdir rols_1.13.0.tar.gz >rols.Rcheck\00install.out 2>&1 && cp rols.Rcheck\00install.out rols-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rols.buildbin-libdir --install="check:rols-install.out" --force-multiarch --no-vignettes --timings rols_1.13.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/rols.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rols/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rols' version '1.13.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rols' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File 'rols/R/queries.R':
unlockBinding("ontologies", .rolsEnv)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [22s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
CVParam-class 1.94 0.08 10.82
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
allIds 3.42 0.00 7.77
CVParam-class 1.89 0.01 10.18
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R' [49s]
[49s] OK
** running tests for arch 'x64' ...
Running 'testthat.R' [52s]
[52s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'c:/biocbld/bbs-3.3-bioc/meat/rols.Rcheck/00check.log'
for details.
rols.Rcheck/00install.out:
install for i386
* installing *source* package 'rols' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'rols' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rols' as rols_1.13.0.zip
* DONE (rols)
rols.Rcheck/examples_i386/rols-Ex.timings:
| name | user | system | elapsed
|
| CVParam-class | 1.94 | 0.08 | 10.82 |
|
| allIds | 2.71 | 0.00 | 4.40 |
|
| childrenRelations | 0.04 | 0.00 | 0.20 |
|
| isIdObsolete | 0.14 | 0.00 | 1.70 |
|
| olsQuery | 0.17 | 0.03 | 0.91 |
|
| olsVersion | 0.00 | 0.00 | 0.19 |
|
| ontologies | 0.00 | 0.01 | 0.01 |
|
| ontologyLoadDate | 0.06 | 0.00 | 0.42 |
|
| ontologyNames | 0.02 | 0.00 | 0.02 |
|
| parents | 0.06 | 0.00 | 0.23 |
|
| rootId | 0.14 | 0.00 | 0.66 |
|
| term | 0.11 | 0.00 | 0.95 |
|
| termMetadata | 0.06 | 0.00 | 0.80 |
|
rols.Rcheck/examples_x64/rols-Ex.timings:
| name | user | system | elapsed
|
| CVParam-class | 1.89 | 0.01 | 10.18 |
|
| allIds | 3.42 | 0.00 | 7.77 |
|
| childrenRelations | 0.04 | 0.00 | 0.22 |
|
| isIdObsolete | 0.18 | 0.04 | 1.47 |
|
| olsQuery | 0.19 | 0.00 | 0.89 |
|
| olsVersion | 0.00 | 0.00 | 0.17 |
|
| ontologies | 0.02 | 0.00 | 0.01 |
|
| ontologyLoadDate | 0.04 | 0.00 | 0.38 |
|
| ontologyNames | 0 | 0 | 0 |
|
| parents | 0.03 | 0.00 | 0.20 |
|
| rootId | 0.09 | 0.00 | 0.62 |
|
| term | 0.10 | 0.00 | 2.61 |
|
| termMetadata | 0.06 | 0.00 | 0.42 |
|